Gene omics information

Query gene ID At1g28550
Gene name AtRABA1i (Arabidopsis Rab GTPase homolog A1i)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At1g28550839755AtRABA1i (Arabidopsis Rab GTPase homolog A1i)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAS.X.H.G.
0.3338.1At1g11250837666SYP125 (SYNTAXIN OF PLANTS 125)member of SYP12 Gene FamilyS.X.H.G.
0.2522.6At3g60570825228ATEXPB5 (ARABIDOPSIS THALIANA EXPANSIN B5)member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)S.X.H.G.
0.2217.5At4g13240826941ROPGEF9Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.S.X.H.G.
0.061.4At2g20700816598unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
391.3100.0GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
274.7100.0GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
254.6100.0GSM239253CaMV::DME pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
244.6100.0GSM239252Columbia glabrous (C24) wild type stamenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
232.5100.0E-MEXP-285-raw-cel-440782725
220.0100.0GSM239251Columbia glabrous (C24) wild type pollenGSE9408Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
218.4100.0GSM142740DH001_ATH1_A7-MPG1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
216.4100.0GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
213.9100.0GSM154508Arabidopsis growing pollen tubes rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
186.7100.0E-MEXP-285-raw-cel-440782791
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.851e-160565At2g33870817957ArRABA1h (Arabidopsis Rab GTPase homolog A1h)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVAC.G.S.X.
0.644e-93341At3g15060820735AtRABA1g (Arabidopsis Rab GTPase homolog A1g)F:GTP binding;P:response to cadmium ion;C:unknown;MOFPBAVC.G.S.X.
0.581e-46186At5g60860836207AtRABA1f (Arabidopsis Rab GTPase homolog A1f)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBAVC.G.S.X.
0.513e-29129At4g18430827574AtRABA1e (Arabidopsis Rab GTPase homolog A1e)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAVC.G.S.X.
0.213e-2099At1g06400837151ARA-2small GTP-binding protein (ara-2)C.G.S.X.
0.323e-1789At5g45750834614AtRABA1c (Arabidopsis Rab GTPase homolog A1c)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus, vacuole;MOFPBAVC.G.S.X.
0.382e-1583At4g18800827614ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAC.G.S.X.
0.109e-857At5g65270836652AtRABA4a (Arabidopsis Rab GTPase homolog A4a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, membrane;MOFPBVAC.G.S.X.
0.121e-654At4g39990830160RABA4B (RAB GTPASE HOMOLOG A4B)GTP-binding protein ATGB3C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.472e-49196Glycine maxGma.2430.1.S1_atBU546249--9e-74At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)C.G.S.X.
0.335e-29127Hordeum vulgareContig3165_atContig3165--2e-28At1g28550AtRABA1i (Arabidopsis Rab GTPase homolog A1i)C.G.S.X.
0.398e-1995Oryza sativaOs05g0564400AK073075.1-GTP-binding protein4e-45At5g60860AtRABA1f (Arabidopsis Rab GTPase homolog A1f)C.G.S.X.
0.425e-41169Populus trichocarpaPtpAffx.9745.1.A1_atCV230310--1e-38At5g60860AtRABA1f (Arabidopsis Rab GTPase homolog A1f)C.G.S.X.
0.296e-1581Triticum aestivumTaAffx.94489.1.S1_atBQ608803rab GTP-binding protein-1e-22At3g15060AtRABA1g (Arabidopsis Rab GTPase homolog A1g)C.G.S.X.
0.301e-1685Vitis vinifera1615972_atCF215988hypothetical protein LOC100249712-9e-33At5g45750AtRABA1c (Arabidopsis Rab GTPase homolog A1c)C.G.S.X.
0.271e-2099Zea maysZm.48.1.S1_atD31905.1mgp1 GTP-binding protein-6e-25At5g60860AtRABA1f (Arabidopsis Rab GTPase homolog A1f)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
LGO:0015031The directed movement of proteins into, out of, within or between cells.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage