CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g28540

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g28540 839754 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At1g11020 837644 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.25 22.6 At4g29660 829087 EMB2752 (EMBRYO DEFECTIVE 2752) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.20 14.4 At4g10330 826625 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.04 0.9 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO S.X. H.G.
0.02 0.4 At3g15660 820809 GRX4 (GLUTAREDOXIN 4) F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
139.5 99.9 GSM133780 Lindsey_1-3_globular-apical_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.0 99.8 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
37.4 99.7 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
22.7 99.6 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.3 99.6 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
19.2 99.6 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.8 99.5 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
17.5 99.5 E-TABM-52-raw-cel-1583683022
17.1 99.5 GSM133314 RIKEN-LI2B GSE5701 AtGenExpress: Basic hormone treatment of seeds
15.2 99.4 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 4e-2 38 At2g42975 818899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PMF C.G. S.X.
0.03 1e-1 36 At5g16440 831505 IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1) Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway. C.G. S.X.
0.02 1e-1 36 At3g53320 824500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPV C.G. S.X.
0.04 1e-1 36 At3g07340 819922 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB C.G. S.X.
0.02 6e-1 34 At1g53210 841755 sodium/calcium exchanger family protein / calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMA C.G. S.X.
0.01 6e-1 34 At1g09600 837487 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 2e+0 32 At5g19090 832028 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVA C.G. S.X.
0.02 2e+0 32 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 9e-10 63 Glycine max GmaAffx.81423.1.S1_at BF595004 - - 1e-9 At1g28540 unknown protein C.G. S.X.
0.04 5e+0 30 Hordeum vulgare Contig10567_s_at Contig10567 - - 4e+0 At5g10450 GRF6 (G-box regulating factor 6) C.G. S.X.
0.06 2e-2 40 Oryza sativa OsAffx.4987.1.S1_at - - - 0 C.G. S.X.
0.24 4e-9 61 Populus trichocarpa PtpAffx.60143.2.S1_a_at DN487528 hypothetical protein - 4e-9 At1g28540 unknown protein C.G. S.X.
0.05 6e-1 34 Triticum aestivum TaAffx.84100.3.S1_at CA607342 - - 1e-2 At3g55440 TPI (TRIOSEPHOSPHATE ISOMERASE) C.G. S.X.
0.04 7e-1 32 Vitis vinifera 1622005_at CB981713 hypothetical protein LOC100243182 /// hypothetical protein LOC100246384 /// hypothetical LOC100247083 /// hypothetical protein LOC100252427 /// hypothetical protein LOC100253852 - 9e-1 At2g10608 unknown protein C.G. S.X.
0.05 4e+0 30 Zea mays ZmAffx.1437.1.S1_at 11990232-3 - - 2e-53 Atcg00050 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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