Gene omics information

Query gene ID At1g28540
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g28540839754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.2522.6At1g11020837644zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFVS.X.H.G.
0.2522.6At4g29660829087EMB2752 (EMBRYO DEFECTIVE 2752)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PS.X.H.G.
0.2014.4At4g10330826625glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.040.9At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOS.X.H.G.
0.020.4At3g15660820809GRX4 (GLUTAREDOXIN 4)F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFAS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
139.599.9GSM133780Lindsey_1-3_globular-apical_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
39.099.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
37.499.7GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
22.799.6GSM134304Penfield_1-6_endosperm-ABA_Rep3_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
21.399.6GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
17.899.5GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
17.199.5GSM133314RIKEN-LI2BGSE5701AtGenExpress: Basic hormone treatment of seeds
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.054e-238At2g42975818899unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PMFC.G.S.X.
0.031e-136At5g16440831505IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.C.G.S.X.
0.021e-136At3g53320824500unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVC.G.S.X.
0.041e-136At3g07340819922basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFBC.G.S.X.
0.026e-134At1g53210841755sodium/calcium exchanger family protein / calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;PFBOMAC.G.S.X.
0.016e-134At1g09600837487protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.012e+032At5g19090832028heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.022e+032At5g13730831218SIG4 (SIGMA FACTOR 4)Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.C.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.109e-1063Glycine maxGmaAffx.81423.1.S1_atBF595004--1e-9At1g28540unknown proteinC.G.S.X.
0.045e+030Hordeum vulgareContig10567_s_atContig10567--4e+0At5g10450GRF6 (G-box regulating factor 6)C.G.S.X.
0.062e-240Oryza sativaOsAffx.4987.1.S1_at---0C.G.S.X.
0.244e-961Populus trichocarpaPtpAffx.60143.2.S1_a_atDN487528hypothetical protein-4e-9At1g28540unknown proteinC.G.S.X.
0.056e-134Triticum aestivumTaAffx.84100.3.S1_atCA607342--1e-2At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)C.G.S.X.
0.047e-132Vitis vinifera1622005_atCB981713hypothetical protein LOC100243182 /// hypothetical protein LOC100246384 /// hypothetical LOC100247083 /// hypothetical protein LOC100252427 /// hypothetical protein LOC100253852-9e-1At2g10608unknown proteinC.G.S.X.
0.054e+030Zea maysZmAffx.1437.1.S1_at11990232-3--2e-53Atcg00050-C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage