CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g28480

Gene name GRX480

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g28480 839748 GRX480 Encodes GRX480, a member of the glutaredoxin family that regulates protein redox state. GRX480 interacts with TGA factors and suppresses JA-responsive PDF1.2 transcription. GRX480 transcription is SA-inducible and requires NPR1. Maybe involved in SA/JA cross-talk. S.X. H.G.
0.92 96.0 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.83 91.4 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.82 90.9 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.82 90.9 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. S.X. H.G.
0.80 89.8 At2g30040 817555 MAPKKK14 member of MEKK subfamily S.X. H.G.
0.71 84.2 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.44 57.2 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
203.5 100.0 E-MEXP-807-raw-cel-1173273223
182.0 100.0 E-MEXP-807-raw-cel-1173273060
174.2 100.0 E-MEXP-807-raw-cel-1173273144
157.8 99.9 E-MEXP-807-raw-cel-1173273088
157.1 99.9 E-MEXP-807-raw-cel-1173273196
150.3 99.9 E-MEXP-807-raw-cel-1173273116
138.1 99.9 E-MEXP-807-raw-cel-1173273252
116.3 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
102.7 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
98.1 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-2 38 At3g24480 822038 leucine-rich repeat family protein / extensin family protein F:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVA C.G. S.X.
0.01 2e-1 36 At4g14920 827150 DNA binding / protein binding / zinc ion binding F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO C.G. S.X.
0.01 2e-1 36 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA C.G. S.X.
0.01 2e-1 36 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA C.G. S.X.
0.01 2e-1 36 At3g48110 823966 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase C.G. S.X.
0.04 2e-1 36 At2g37020 818276 DNA binding / sequence-specific DNA binding F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPA C.G. S.X.
0.02 2e-1 36 At1g53900 841828 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPA C.G. S.X.
0.02 2e-1 36 At1g53880 841825 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPA C.G. S.X.
0.01 8e-1 34 At4g24040 828504 TRE1 (TREHALASE 1) Encodes a trehalase, member of Glycoside Hydrolase Family 37. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-8 59 Glycine max GmaAffx.4537.1.S1_at BU550013 - - 3e-8 At1g28480 GRX480 C.G. S.X.
0.07 6e+0 30 Hordeum vulgare Contig18572_at Contig18572 - - 6e-5 At4g33660 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.23028.1.S1_at - - - 0 C.G. S.X.
0.03 3e-1 36 Populus trichocarpa Ptp.519.1.A1_at CV269613 hypothetical protein - 3e-2 At3g54390 transcription factor C.G. S.X.
0.05 3e+0 32 Triticum aestivum TaAffx.93449.1.S1_at BJ210355 - - 8e+0 Atmg01010 - C.G. S.X.
0.12 4e-3 40 Vitis vinifera 1616703_at BQ800335 hypothetical protein LOC100255569 - 2e-2 At1g28480 GRX480 C.G. S.X.
0.04 5e+0 30 Zea mays ZmAffx.980.1.S1_at AI714647 - - 3e+0 At4g28485 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009751 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus.
X GO:0009863 A series of molecular signals mediated by salicylic acid.
X GO:0009867 A series of molecular signals mediated by jasmonic acid.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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