Gene omics information

Query gene ID At1g28270
Gene name RALFL4 (ralf-like 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7788.0At1g28270839721RALFL4 (ralf-like 4)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.9396.4At1g69940843331PPME1Encodes a protein with pectin methylesterase activity. The protein expression was shown to be highly restricted to the pollen grain (no detection in any other tissues or in the pollen grains' surrounding cells of the anthers.S.X.H.G.
0.9396.4At3g62170825390VGDH2 (Vanguard 1 homolog 2)F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOS.X.H.G.
0.9195.6At3g28750822507unknown proteinF:unknown;P:unknown;C:endomembrane system;POS.X.H.G.
0.9195.6At5g14380831289AGP6 (Arabinogalactan proteins 6)Encodes an arabinogalactan protein that is expressed in pollen, pollen sac and pollen tube. Loss of AGP6 function results in decreased fertility due to defects in pollen tube growth.S.X.H.G.
0.9095.1At1g02790839391PGA4 (POLYGALACTURONASE 4)encodes a exopolygalacturonase.S.X.H.G.
0.8894.0At3g01270821142pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.8894.0At3g20865821635AGP40 (arabinogalactan-protein 40)Encodes a putative arabinogalactan-protein (AGP40).S.X.H.G.
0.8894.0At1g61563842451RALFL8 (ralf-like 8)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.S.X.H.G.
0.8894.0At3g57690824938AGP23 (ARABINOGALACTAN-PROTEIN 23)Encodes a putative arabinogalactan-protein (AGP23).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
132.299.9GSM154503Arabidopsis desiccated mature pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
119.599.9E-MEXP-1138-raw-cel-1432772874
107.499.9GSM154507Arabidopsis growing pollen tubes rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
106.899.9E-MEXP-1138-raw-cel-1432773130
103.299.9E-MEXP-1138-raw-cel-1432773290
102.699.9E-MEXP-1138-raw-cel-1432773098
100.299.9GSM154505Arabidopsis hydrated pollen grains rep1GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
98.299.9GSM154504Arabidopsis desiccated mature pollen grains rep2GSE6696Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
96.199.9E-MEXP-1138-raw-cel-1432773322
94.899.9E-MEXP-1138-raw-cel-1432772810
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.405e-23107At2g33775817944RALFL19 (ralf-like 19)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
0.081e-240At3g05490819714RALFL22 (ralf-like 22)Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.C.G.S.X.
0.056e-134At5g23760832441heavy-metal-associated domain-containing proteinF:metal ion binding;P:metal ion transport;C:cellular_component unknown;OMPFABVC.G.S.X.
0.016e-134At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionC.G.S.X.
0.066e-134At5g53880835469unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plasma membrane;MOFPBAVC.G.S.X.
0.056e-134At2g2771081731760S acidic ribosomal protein P2 (RPP2B)F:structural constituent of ribosome;P:translational elongation, response to cold;C:in 8 components;MFPOABC.G.S.X.
0.046e-134At1g29480839825unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.059e-134Glycine maxGma.9916.1.S1_atBG509382--6e-15At4g15800RALFL33 (ralf-like 33)C.G.S.X.
0.041e+032Hordeum vulgareHB22D03r_atHB22D03r--3e+0At1g28270RALFL4 (ralf-like 4)C.G.S.X.
0.065e+032Oryza sativaOsAffx.25871.1.S1_at---0C.G.S.X.
0.124e-342Populus trichocarpaPtpAffx.203888.1.S1_s_atpmrna7676hypothetical protein-6e-6At2g33775RALFL19 (ralf-like 19)C.G.S.X.
0.043e+032Triticum aestivumTaAffx.54530.2.A1_atBJ249714--9e-1At2g14540serpin family protein / serine protease inhibitor family proteinC.G.S.X.
0.043e+030Vitis vinifera1621997_s_atCF512249hypothetical protein LOC100259237-2e-1At1g14200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.044e+030Zea maysZmAffx.73.1.S1_atAI665183Hypothetical protein LOC100191932-1e-5At1g11930alanine racemase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0007267Any process that mediates the transfer of information from one cell to another.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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