Gene omics information

Query gene ID At1g27990
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g27990839692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9195.6At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.9095.1At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOS.X.H.G.
0.8894.0At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.8793.5At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8592.4At3g11050820276ATFER2 (ferritin 2)F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAFS.X.H.G.
0.8592.4At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8592.4At4g21020827849late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVAS.X.H.G.
0.8491.9At2g19320816449unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.8290.9At4g27530828862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
431.8100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
380.4100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
368.7100.0GSM131701ATGE_82_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
364.6100.0GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
357.7100.0GSM131704ATGE_83_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
354.6100.0GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
351.9100.0GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
323.7100.0GSM131703ATGE_83_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
307.9100.0GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
261.4100.0GSM131700ATGE_82_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e+034At5g52310835307LTI78 (LOW-TEMPERATURE-INDUCED 78)cold regulated gene, the 5' region of cor78 has cis-acting regulatory elements that can impart cold-regulated gene expressionC.G.S.X.
0.022e+034At4g00110828145GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3)Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase.C.G.S.X.
0.012e+034At1g69220843253SIK1Encodes a putative serine/threonine kinase (SIK1).C.G.S.X.
0.016e+032At5g15410831393DND1 (DEFENSE NO DEATH 1)'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile. Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.C.G.S.X.
0.016e+032At5g67310836866CYP81G1member of CYP81GC.G.S.X.
0.016e+032At5g27270832785EMB976 (EMBRYO DEFECTIVE 976)F:unknown;P:biological_process unknown;C:chloroplast;POMFBAC.G.S.X.
0.016e+032At5g39420833938cdc2cAt (Arabidopsis thaliana cdc2c)F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.082e+034Glycine maxGmaAffx.35493.1.S1_atBF595970--4e-2At4g17670senescence-associated protein-relatedC.G.S.X.
0.033e+032Hordeum vulgareContig18214_atContig18214--3e+0At1g09140SF2/ASF-like splicing modulator (SRP30)C.G.S.X.
0.033e+034Oryza sativaOsAffx.3413.1.S1_at---0C.G.S.X.
0.092e-448Populus trichocarpaPtpAffx.2551.1.S1_atCV270107hypothetical protein-2e-4At1g27990unknown proteinC.G.S.X.
0.037e+032Triticum aestivumTa.6391.2.A1_atBJ309368--1e+0At1g44790ChaC-like family proteinC.G.S.X.
0.032e+032Vitis vinifera1614076_atCB346355hypothetical protein LOC100254333-2e-1At2g30560glycine-rich proteinC.G.S.X.
0.023e+032Zea maysZm.384.1.A1_atAF001635.1physical impedance induced protein2-6e+0At5g03100F-box family proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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