CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27930

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g27930 839686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB S.X. H.G.
0.47 61.2 At1g23490 838957 ATARF1 (ADP-RIBOSYLATION FACTOR 1) Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
0.46 59.8 At3g13410 820541 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P S.X. H.G.
0.46 59.8 At3g58730 825042 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD) F:ATPase activity, coupled to transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, membrane, plant-type vacuole;BMAOFP S.X. H.G.
0.44 57.2 At4g04210 825736 PUX4 Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) S.X. H.G.
0.42 53.9 At1g04690 839450 KAB1 (POTASSIUM CHANNEL BETA SUBUNIT) F:oxidoreductase activity, potassium channel activity;P:oxidation reduction, potassium ion transport;C:plasma membrane, membrane;BOFMPA S.X. H.G.
0.42 53.9 At1g70490 843385 ARFA1D A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. S.X. H.G.
0.38 46.7 At5g40810 834081 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:mitochondrial respiratory chain, mitochondrion, vacuole, mitochondrial respiratory chain complex III, membrane;OBMFP S.X. H.G.
0.37 45.0 At3g12290 820409 tetrahydrofolate dehydrogenase/cyclohydrolase, putative F:binding, catalytic activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;OBMFPA S.X. H.G.
0.36 43.6 At3g24160 822002 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
15.3 99.4 E-MEXP-1474-raw-cel-1593932801
10.4 99.2 E-MEXP-1474-raw-cel-1593932897
9.7 99.1 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
9.6 99.1 E-MEXP-1474-raw-cel-1593932737
8.6 99.0 E-MEXP-1474-raw-cel-1593932545
8.2 99.0 GSM133403 Bramke_A3-warre-S6C GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
7.9 98.9 GSM133407 Bramke_A1-warre-WTC GSE5711 Cold induced changes: differences between the Arabidopsis thaliana wild type and freezing sensitive mutants.
7.9 98.9 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
7.8 98.9 E-MEXP-1474-raw-cel-1593932769
7.8 98.9 E-MEXP-1474-raw-cel-1593932705
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 5e-10 65 At1g67330 843054 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POB C.G. S.X.
0.02 7e-3 42 At3g05820 819751 beta-fructofuranosidase/ catalytic F:catalytic activity, beta-fructofuranosidase activity;P:biological_process unknown;C:unknown;OPB C.G. S.X.
0.01 1e-1 38 At4g33010 829438 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) F:glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMP C.G. S.X.
0.07 4e-1 36 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB C.G. S.X.
0.02 2e+0 34 At5g26622 3770734 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P C.G. S.X.
0.01 2e+0 34 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA C.G. S.X.
0.01 2e+0 34 At5g59200 836038 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:endomembrane system;POMF C.G. S.X.
0.02 2e+0 34 At5g38500 833838 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;OMPFB C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 6e-7 56 Glycine max GmaAffx.50095.1.S1_at AW102297 - - 4e-7 At1g27930 unknown protein C.G. S.X.
0.02 3e+0 32 Hordeum vulgare Contig15488_at Contig15488 - - 2e-8 At3g15090 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.04 8e-1 36 Oryza sativa Os02g0158500 9630.m00568 - Uncharacterized plant-specific domain 01627containing protein 6e-4 At5g67210 unknown protein C.G. S.X.
0.07 2e-3 44 Populus trichocarpa PtpAffx.19609.2.A1_at CV243642 hypothetical protein - 2e-3 At1g27930 unknown protein C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.111985.1.S1_at CA635709 - - 7e-2 At1g27930 unknown protein C.G. S.X.
0.02 5e-1 34 Vitis vinifera 1609351_at CB975231 - - 3e-1 At5g14360 ubiquitin family protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.9631.1.A1_at BM336220 Hypothetical protein LOC100216879 - 3e-1 At5g52360 ADF10 (ACTIN DEPOLYMERIZING FACTOR 10) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage