CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27760

Gene name interferon-related developmental regulator family protein / IFRD protein family

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.13 5.8 At1g27760 839669 interferon-related developmental regulator family protein / IFRD protein family Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress. S.X. H.G.
0.44 57.2 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO S.X. H.G.
0.22 17.5 At4g12000 826807 - F:unknown;P:response to oxidative stress;C:unknown;BOPMFA S.X. H.G.
0.12 4.9 At1g30620 839942 MUR4 (MURUS 4) encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans. S.X. H.G.
0.04 0.9 At5g42570 834264 - F:molecular_function unknown;P:intracellular protein transport;C:endoplasmic reticulum, plasma membrane;MPOFAB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
175.7 100.0 E-MEXP-1443-raw-cel-1581869803
145.3 99.9 E-MEXP-1443-raw-cel-1581869745
36.9 99.7 GSM142869 GW001_ATH1_A14-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
32.6 99.7 GSM142865 GW001_ATH1_A10-Warre-Wca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
32.3 99.7 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
30.7 99.7 GSM142868 GW001_ATH1_A13-Warre-3ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
30.3 99.7 E-MEXP-1443-raw-cel-1581869921
29.9 99.7 GSM142867 GW001_ATH1_A12-Warre-6ca GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
28.5 99.7 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
27.0 99.7 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At3g45830 823726 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBV C.G. S.X.
0.01 7e-1 36 At5g15140 831366 aldose 1-epimerase family protein F:aldose 1-epimerase activity;P:galactose metabolic process, hexose metabolic process, carbohydrate metabolic process;C:endomembrane system;OBMFPVA C.G. S.X.
0.01 7e-1 36 At1g66880 843006 serine/threonine protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 7e-1 36 At1g31970 840087 STRS1 (STRESS RESPONSE SUPPRESSOR 1) F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:unknown;BOMFPAV C.G. S.X.
0.01 7e-1 36 At1g73810 843717 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 2e-5 52 Glycine max Gma.2722.1.S1_at AI856313 - - 5e-6 At1g27760 interferon-related developmental regulator family protein / IFRD protein family C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig18379_at Contig18379 - - 2e+0 At5g37760 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os01g0922700 9629.m06891 - Hypothetical protein 7e-2 At1g27760 interferon-related developmental regulator family protein / IFRD protein family C.G. S.X.
0.08 3e-16 87 Populus trichocarpa PtpAffx.52429.1.S1_at CV265937 hypothetical protein - 1e-16 At1g27760 interferon-related developmental regulator family protein / IFRD protein family C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.26094.1.S1_at CA692013 - - 4e+0 At5g03510 zinc finger (C2H2 type) family protein C.G. S.X.
0.05 2e-1 36 Vitis vinifera 1606851_a_at CB007201 hypothetical protein LOC100267843 - 3e-1 At1g27760 interferon-related developmental regulator family protein / IFRD protein family C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1118.1.A1_at AW355922 - - 3e+0 At5g66330 leucine-rich repeat family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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