Gene omics information

Query gene ID At1g27740
Gene name basic helix-loop-helix (bHLH) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5570.6At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOS.X.H.G.
1.00100.0At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
1.00100.0At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.S.X.H.G.
0.6781.6At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.5773.8At1g01750839281ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)F:actin binding;P:biological_process unknown;C:intracellular;MPOFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
157.599.9GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
140.599.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
130.099.9GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
126.199.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
123.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.199.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.199.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.499.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
110.299.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.399e-36151At5g43175834335basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMC.G.S.X.
0.172e-24113At4g33880829531basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBC.G.S.X.
0.207e-1581At2g14760815964basic helix-loop-helix protein / bHLH proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;PMOFVBC.G.S.X.
0.021e-138At5g41070834109DRB5 (DSRNA-BINDING PROTEIN 5)Encodes a double-stranded RNA binding protein.C.G.S.X.
0.011e-138At3g06670819852bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.041e-138At1g25330839117basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFC.G.S.X.
0.021e-138At1g22800838886methyltransferaseF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Glycine maxGmaAffx.47341.1.S1_atAW569320--9e-1At1g32020F-box family proteinC.G.S.X.
0.043e+032Hordeum vulgareHVSMEn0014H06r2_s_atHVSMEn0014H06r2--4e-2At3g02150PTF1 (PLASTID TRANSCRIPTION FACTOR 1)C.G.S.X.
0.203e-22107Oryza sativaOs03g06178009631.m04050-INDEHISCENT protein2e-22At1g27740basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.202e-1067Populus trichocarpaPtpAffx.201189.1.S1_atpmrna2353hypothetical protein-2e-22At2g14760basic helix-loop-helix protein / bHLH proteinC.G.S.X.
0.092e-963Triticum aestivumTa.8188.1.S1_atCK200319--1e-11At4g33880basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.034e-134Vitis vinifera1615044_atBQ795572--1e+0At1g27740basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.145e-1477Zea maysZm.17179.1.A1_atCK368850--9e-14At1g27740basic helix-loop-helix (bHLH) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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