CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27670

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.28 30.3 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.75 86.9 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. S.X. H.G.
0.55 70.6 At2g43050 818907 ATPMEPCRD F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM S.X. H.G.
0.43 55.3 At2g21140 816649 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. S.X. H.G.
0.35 41.6 At4g16515 827350 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
90.8 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.2 99.9 GSM282698 Col_BRZ_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
89.7 99.9 GSM282693 arf2_brz_1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
83.6 99.9 GSM131210 AtGen_D-44_3-RS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
79.9 99.9 GSM131180 AtGen_D-12_1-RS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
78.4 99.9 GSM131209 AtGen_D-43_3-PS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
74.5 99.9 GSM131178 AtGen_D-10_1-FS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
73.7 99.9 GSM282703 arf2_brz_2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
70.7 99.9 GSM131182 AtGen_D-14_1-AS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
67.7 99.9 GSM131179 AtGen_D-11_1-PS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-1 36 At5g43420 834362 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.03 3e-1 36 At4g14805 827136 protease inhibitor/seed storage/lipid transfer protein (LTP)-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PMFO C.G. S.X.
0.02 3e-1 36 At3g20810 821629 transcription factor jumonji (jmjC) domain-containing protein F:transcription factor activity;P:biological_process unknown;C:cellular_component unknown;MBOFPV C.G. S.X.
0.03 1e+0 34 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.02 1e+0 34 At5g21120 832237 EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2) ethylene-insensitive3-like2 (EIL2) C.G. S.X.
0.02 1e+0 34 At5g11000 830967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.02 1e+0 34 At4g13000 826913 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 1e+0 34 At3g51290 824292 proline-rich family protein F:unknown;P:N-terminal protein myristoylation;C:unknown;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 38 Glycine max HgAffx.19294.1.S1_at CB824520 - - 8e-2 At1g27670 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig20848_at Contig20848 - - 1e-3 At2g35960 NHL12 C.G. S.X.
0.03 7e-1 36 Oryza sativa OsAffx.23941.2.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.105289.1.S1_at CK097656 - - 3e-1 At2g20420 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.98332.1.S1_at BF199924 - - 8e-1 At4g13050 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614931_at CF605861 hypothetical protein LOC100241227 - 3e-1 At5g04470 SIM (SIAMESE) C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.948.1.A1_at AI833407 - - 5e-2 At3g13350 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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