CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27380

Gene name RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. S.X. H.G.
1.00 100.0 At3g50220 824184 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.98 97.8 At2g41610 818759 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At1g22480 838854 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO S.X. H.G.
0.95 97.0 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.95 97.0 At5g17420 831608 IRX3 (IRREGULAR XYLEM 3) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181). S.X. H.G.
0.93 96.4 At3g15050 820734 IQD10 (IQ-domain 10) F:calmodulin binding;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.93 96.4 At4g28500 828968 ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73) F:transcription factor activity, transcription activator activity;P:multicellular organismal development, regulation of secondary cell wall thickening;C:nucleus;PO S.X. H.G.
0.93 96.4 At2g29130 817462 LAC2 (laccase 2) putative laccase, knockout mutant had reduced root elongation under PEG-induced dehydration S.X. H.G.
0.93 96.4 At1g32770 840171 ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12) Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
323.4 100.0 E-MEXP-1451-raw-cel-1585200362
265.5 100.0 E-MEXP-265-raw-cel-414618394
214.9 100.0 GSM131656 ATGE_27_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
214.6 100.0 E-MEXP-265-raw-cel-414618693
211.9 100.0 E-MEXP-265-raw-cel-414618796
209.3 100.0 GSM133753 Turner_A-7-Turne-WT-Base1_SLD GSE5729 Role of COV in vascular patterning
206.4 100.0 GSM131657 ATGE_27_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
190.9 100.0 E-MEXP-265-raw-cel-414618491
189.0 100.0 GSM131655 ATGE_27_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
187.1 100.0 E-MEXP-265-raw-cel-414618291
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 4e-2 38 At4g38220 829978 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative F:metallopeptidase activity, hydrolase activity, protein dimerization activity, aminoacylase activity;P:amino acid metabolic process, proteolysis;C:vacuole;BOMFAPV C.G. S.X.
0.04 2e-1 36 At5g50490 835117 NF-YC5 (NUCLEAR FACTOR Y, SUBUNIT C5) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO C.G. S.X.
0.06 2e-1 36 At5g16490 831510 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). It interacts with Rop1 and is involved in pollen tube growth and function, and exocytosis in the pollen tube tip. Protein most similar to RIC2 (family subgroup V). Gene is expressed in all tissues examined.Interacts with ROP2 during pavement cell morphogenesis and with ROP1 to promote apical F-actin assembly. C.G. S.X.
0.04 2e-1 36 At2g27470 817292 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) F:transcription factor activity;P:regulation of transcription;C:intracellular;OMFBPVA C.G. S.X.
0.03 2e-1 36 At2g19670 816486 PRMT1A (PROTEIN ARGININE METHYLTRANSFERASE 1A) F:protein-arginine N-methyltransferase activity;P:unknown;C:unknown;MBOPFA C.G. S.X.
0.03 6e-1 34 At5g65990 836729 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPOFBAV C.G. S.X.
0.04 6e-1 34 At4g04745 825810 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 40 Glycine max PsAffx.C124000004_at PsAffx.C124000004 - - 2e-2 At1g27380 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HF13G15r_s_at HF13G15r - - 1e+0 At4g15620 integral membrane family protein C.G. S.X.
0.05 5e+0 32 Oryza sativa Os03g0368500 9631.m02476 - - 1e+1 At4g08230 glycine-rich protein C.G. S.X.
0.06 2e-1 36 Populus trichocarpa PtpAffx.210256.1.S1_at pmrna20186 hypothetical protein - 1e-1 At1g27380 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) C.G. S.X.
0.05 7e-1 34 Triticum aestivum TaAffx.104809.1.S1_at CA743253 - - 7e-1 At3g48930 EMB1080 (embryo defective 1080) C.G. S.X.
0.07 1e-5 48 Vitis vinifera 1620954_at CF513203 hypothetical protein LOC100242907 - 7e-2 At4g04900 RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10) C.G. S.X.
0.07 3e-1 34 Zea mays ZmAffx.1127.1.S1_at AW324638 - - 2e-1 At1g27380 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009860 Growth of pollen via tip extension of the intine wall.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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