Gene omics information

Query gene ID At1g27220
Gene name paired amphipathic helix repeat-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8391.4At1g27220839611paired amphipathic helix repeat-containing proteinF:nucleic acid binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOBS.X.H.G.
0.9597.0At1g19320838514pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVS.X.H.G.
0.9597.0At1g36340840541UBC31 (ubiquitin-conjugating enzyme 31)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:vacuole;MFOPVS.X.H.G.
0.9597.0At5g11220830992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9396.4At5g38960833888germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBS.X.H.G.
0.9396.4At3g30280822728transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.9296.0At2g21420816681zinc finger protein-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVAS.X.H.G.
0.9195.6At4g27550828864ATTPS4Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.S.X.H.G.
0.9195.6At5g36680833633unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.9195.6At1g28630839763unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
879.5100.0GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
867.8100.0GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
190.1100.0E-MEXP-509-raw-cel-829148561
168.0100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
135.199.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
133.099.9E-MEXP-509-raw-cel-829148525
129.499.9E-MEXP-509-raw-cel-829148456
123.699.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
116.999.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
116.599.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.413e-38159At1g27250839613paired amphipathic helix repeat-containing proteinF:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MPFOC.G.S.X.
0.032e-240At2g33160817877glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMAC.G.S.X.
0.027e-238At4g37160829870sks15 (SKU5 Similar 15)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.083e-136At2g04420814982nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:mitochondrion;PBOC.G.S.X.
0.021e+034At4g05320825880UBQ10 (POLYUBIQUITIN 10)One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e+032Glycine maxGmaAffx.80396.1.S1_atAW598770--3e+0At1g27220paired amphipathic helix repeat-containing proteinC.G.S.X.
0.038e+030Hordeum vulgareEBed02_SQ002_A05_atEBed02_SQ002_A05--1e+1At5g67400peroxidase 73 (PER73) (P73) (PRXR11)C.G.S.X.
0.022e+034Oryza sativaOs11g01763009639.m00689-Hypothetical plant protein family protein1e-17At1g35510unknown proteinC.G.S.X.
0.032e+034Populus trichocarpaPtpAffx.218141.1.S1_x_atpmrna33672multidrug/pheromone exporter, MDR family, ABC transporter family-1e+0At1g11362enzyme inhibitor/ pectinesteraseC.G.S.X.
0.041e+034Triticum aestivumTaAffx.58661.1.S1_atCA617510--1e+1At5g65495unknown proteinC.G.S.X.
0.038e-236Vitis vinifera1618596_atCF212341hypothetical protein LOC100264337-2e-1At1g27220paired amphipathic helix repeat-containing proteinC.G.S.X.
0.043e-238Zea maysZm.5533.1.A1_atBM075731hypothetical protein LOC100193863-7e-2At1g27220paired amphipathic helix repeat-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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