CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27170

Gene name ATP binding / protein binding / transmembrane receptor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.11 4.1 At1g27170 839606 ATP binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:chloroplast;PMBOFAV S.X. H.G.
0.40 50.8 At1g72120 843543 transporter F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF S.X. H.G.
0.40 50.8 At3g29630 822631 glycosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBFO S.X. H.G.
0.40 50.8 At5g27100 832768 ATGLR2.1 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.14 6.8 At4g11530 826757 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
263.1 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
240.8 100.0 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
169.3 100.0 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
119.9 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.1 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
90.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
83.0 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.1 99.9 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
77.6 99.9 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.1 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 4470 At1g27180 839607 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 3e-2 42 At5g43740 834394 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA C.G. S.X.
0.01 3e-2 42 At1g15500 838120 ATNTT2 F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFM C.G. S.X.
0.01 1e-1 40 At5g51350 835209 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFAV C.G. S.X.
0.01 1e-1 40 At4g18020 827527 APRR2 Encodes pseudo-response regulator 2 (APRR2). C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 40 Glycine max PsAffx.CL2411Contig1_at PsAffx.CL2411Contig1 - - 5e+0 At1g35830 VQ motif-containing protein C.G. S.X.
0.01 4e+0 34 Hordeum vulgare HK05A01r_x_at HK05A01r - - 2e+0 At1g18810 phytochrome kinase substrate-related C.G. S.X.
0.01 3e-1 40 Oryza sativa Os11g0479500 9639.m02621 - - 2e+0 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) C.G. S.X.
0.01 5e-2 42 Populus trichocarpa PtpAffx.210410.1.S1_at pmrna20457 tir-nbs-lrr resistance protein - 5e-4 At5g36930 disease resistance protein (TIR-NBS-LRR class), putative C.G. S.X.
0.01 2e+0 36 Triticum aestivum Ta.7532.3.S1_at CA686766 - - 8e-2 At3g48346 unknown protein C.G. S.X.
0.01 6e-1 36 Vitis vinifera 1614384_at CF512271 hypothetical protein LOC100267457 - 3e-4 At5g28150 unknown protein C.G. S.X.
0.01 2e-1 38 Zea mays Zm.8818.1.A1_at BM268303 - - 9e-2 At2g01500 PFS2 (PRETTY FEW SEEDS 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0006915 A form of programmed cell death that begins when a cell receives internal or external signals that trigger the activity of proteolytic caspases, proceeds through a series of characteristic stages typically including rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), and plasma membrane blebbing (but maintenance of its integrity until the final stages of the process), and ends with the death of the cell.
L GO:0007165 The cascade of processes by which a signal interacts with a receptor, causing a change in the level or activity of a second messenger or other downstream target, and ultimately effecting a change in the functioning of the cell.
L GO:0045087 Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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