CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27050

Gene name ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g27050 839594 ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. S.X. H.G.
0.59 74.7 At4g31790 829307 diphthine synthase, putative (DPH5) F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBP S.X. H.G.
0.56 73.0 At5g60990 836220 DEAD/DEAH box helicase, putative (RH10) F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.55 70.6 At1g36310 840538 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMAFP S.X. H.G.
0.46 59.8 At1g06380 837149 ribosomal protein-related F:RNA binding;P:RNA processing;C:chloroplast, chloroplast envelope;MFPOA S.X. H.G.
0.46 59.8 At1g31660 840053 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB S.X. H.G.
0.42 53.9 At3g49990 824161 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA S.X. H.G.
0.40 50.8 At4g18040 827529 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein. S.X. H.G.
0.33 38.1 At3g02220 821238 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBA S.X. H.G.
0.32 35.7 At3g13230 820521 RNA binding F:RNA binding;P:unknown;C:cellular_component unknown;MFAOP S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.5 99.6 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.5 99.6 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4 99.5 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
17.5 99.5 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.3 99.5 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.3 99.5 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.7 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.5 99.5 E-MEXP-1474-raw-cel-1593932641
15.5 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.4 99.4 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 5e-5 50 At5g53980 835481 ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.03 5e-5 50 At1g26960 839587 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.02 2e-4 48 At5g47370 834784 HAT2 homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis. C.G. S.X.
0.04 1e-2 42 At3g61890 825362 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. C.G. S.X.
0.02 5e-2 40 At4g37790 829935 HAT22 Encodes homeobox protein HAT22, member of the HD-Zip II family. C.G. S.X.
0.02 5e-2 40 At4g17460 827457 HAT1 Encodes homeobox protein HAT1. C.G. S.X.
0.03 5e-2 40 At3g01470 821138 ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1) Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. C.G. S.X.
0.02 5e-2 40 At2g18550 816370 HB-2 (HOMEOBOX-2) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. C.G. S.X.
0.02 2e-1 38 At1g72450 843577 JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6) JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 48 Glycine max Gma.8501.1.S1_at AF184278.1 homeodomain-leucine zipper protein 57 - 2e-6 At1g26960 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.02 1e+0 34 Hordeum vulgare EBem10_SQ001_J14_s_at EBem10_SQ001_J14 - - 9e+0 At5g28450 chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putative C.G. S.X.
0.02 4e-1 38 Oryza sativa Os08g0481400 AK106818.1 - Homeobox domain containing protein 1e-6 At5g65310 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) C.G. S.X.
0.03 7e-2 40 Populus trichocarpa PtpAffx.203325.1.S1_at pmrna6617 - - 5e-4 At1g26960 AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) C.G. S.X.
0.02 1e-2 42 Triticum aestivum Ta.5284.1.S1_x_at CK200966 - - 1e-6 At5g65310 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5) C.G. S.X.
0.08 1e-3 44 Vitis vinifera 1613887_at CF511099 - - 7e-8 At5g15150 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3) C.G. S.X.
0.02 3e-1 36 Zea mays ZmAffx.546.1.A1_at AI712125 - - 8e-1 At2g21210 auxin-responsive protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage