Gene omics information

Query gene ID At1g27050
Gene name ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g27050839594ATHB54 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 54)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.S.X.H.G.
0.5974.7At4g31790829307diphthine synthase, putative (DPH5)F:methyltransferase activity, diphthine synthase activity;P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process;C:cellular_component unknown;AOMFBPS.X.H.G.
0.5673.0At5g60990836220DEAD/DEAH box helicase, putative (RH10)F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAVS.X.H.G.
0.5570.6At1g36310840538methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMAFPS.X.H.G.
0.4659.8At1g06380837149ribosomal protein-relatedF:RNA binding;P:RNA processing;C:chloroplast, chloroplast envelope;MFPOAS.X.H.G.
0.4659.8At1g31660840053-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBS.X.H.G.
0.4253.9At3g49990824161-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAS.X.H.G.
0.4050.8At4g18040827529EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.S.X.H.G.
0.3338.1At3g02220821238unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAS.X.H.G.
0.3235.7At3g13230820521RNA bindingF:RNA binding;P:unknown;C:cellular_component unknown;MFAOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
22.599.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.599.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.499.5GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
17.599.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.399.5GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.399.5GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.799.5GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.599.5E-MEXP-1474-raw-cel-1593932641
15.599.5GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
14.499.4GSM205426met1-3_leaf_second-selfed generation_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.035e-550At5g53980835481ATHB52 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 52)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.C.G.S.X.
0.035e-550At1g26960839587AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.C.G.S.X.
0.022e-448At5g47370834784HAT2homeobox-leucine zipper genes induced by auxin, but not by other phytohormones. Plays opposite roles in the shoot and root tissues in regulating auxin-mediated morphogenesis.C.G.S.X.
0.041e-242At3g61890825362ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems.C.G.S.X.
0.025e-240At4g37790829935HAT22Encodes homeobox protein HAT22, member of the HD-Zip II family.C.G.S.X.
0.025e-240At4g17460827457HAT1Encodes homeobox protein HAT1.C.G.S.X.
0.035e-240At3g01470821138ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.C.G.S.X.
0.025e-240At2g18550816370HB-2 (HOMEOBOX-2)Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.C.G.S.X.
0.022e-138At1g72450843577JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)JAZ6 transcript levels rise in response to a jasmonate stimulus and a GFP:JAZ6 fusion protein localizes to the nucleus. Application of jasmonate methyl ester to Arabidopsis roots reduces the levels of a JAZ6:GUS fusion protein, presumably by stimulating ubiquitin-proteasome-mediated degradation.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-448Glycine maxGma.8501.1.S1_atAF184278.1homeodomain-leucine zipper protein 57-2e-6At1g26960AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)C.G.S.X.
0.021e+034Hordeum vulgareEBem10_SQ001_J14_s_atEBem10_SQ001_J14--9e+0At5g28450chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putativeC.G.S.X.
0.024e-138Oryza sativaOs08g0481400AK106818.1-Homeobox domain containing protein1e-6At5g65310ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5)C.G.S.X.
0.037e-240Populus trichocarpaPtpAffx.203325.1.S1_atpmrna6617--5e-4At1g26960AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)C.G.S.X.
0.021e-242Triticum aestivumTa.5284.1.S1_x_atCK200966--1e-6At5g65310ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5)C.G.S.X.
0.081e-344Vitis vinifera1613887_atCF511099--7e-8At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)C.G.S.X.
0.023e-136Zea maysZmAffx.546.1.A1_atAI712125--8e-1At2g21210auxin-responsive protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
LGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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