Gene omics information

Query gene ID At1g27040
Gene name nitrate transporter, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g27040839593nitrate transporter, putativeF:transporter activity;P:oligopeptide transport;C:membrane;BPMOFS.X.H.G.
0.9396.4At1g14580838020zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBS.X.H.G.
0.9396.4At3g30280822728transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.9396.4At4g27550828864ATTPS4Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active but no trehalose phosphatase (TPP)-like domain.S.X.H.G.
0.9095.1At1g19320838514pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVS.X.H.G.
0.9095.1At1g59670842257ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
0.9095.1At5g38960833888germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOBS.X.H.G.
0.8994.6At5g11220830992unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8894.0At1g36340840541UBC31 (ubiquitin-conjugating enzyme 31)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:vacuole;MFOPVS.X.H.G.
0.8894.0At2g21420816681zinc finger protein-relatedF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;BOMFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1600.1100.0GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
667.0100.0GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
157.699.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
141.799.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
140.999.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
132.499.9GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
94.099.9GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
90.199.9GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
71.899.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.199.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.631e-73278At1g69850843321ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2)Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots.C.G.S.X.
0.139e-756At5g62730836394proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPOMFC.G.S.X.
0.018e-136At4g01220828028-F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;POMC.G.S.X.
0.018e-136At3g28910822525MYB30 (MYB DOMAIN PROTEIN 30)transcription factor myb homologueC.G.S.X.
0.018e-136At1g76490843982HMG1 (HYDROXY METHYLGLUTARYL COA REDUCTASE 1)Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confineC.G.S.X.
0.013e+034At5g67440836880NPY3 (NAKED PINS IN YUC MUTANTS 3)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.122e-1791Glycine maxGma.17806.1.S1_atBE820775--7e-18At1g27040nitrate transporter, putativeC.G.S.X.
0.021e-138Hordeum vulgareContig16607_atContig16607--7e-21At3g44600CYP71 (CYCLOPHILIN71)C.G.S.X.
0.077e-654Oryza sativaOs.11807.1.S1_at---0C.G.S.X.
0.241e-1275Populus trichocarpaPtpAffx.208412.1.S1_atpmrna16718hypothetical protein-1e-12At1g27040nitrate transporter, putativeC.G.S.X.
0.024e+034Triticum aestivumTaAffx.53135.1.S1_atCA696275--1e+0At5g15970KIN2C.G.S.X.
0.073e-756Vitis vinifera1618132_atCB976959hypothetical protein LOC100258696-5e-15At1g69850ATNRT1:2 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 1:2)C.G.S.X.
0.021e+034Zea maysZm.4604.1.A1_atCD959559--5e+0At5g37220zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006857The directed movement of oligopeptides into, out of, within or between cells. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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