CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g27030

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.29 30.3 At1g27030 839592 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP S.X. H.G.
0.40 50.8 At5g44920 834522 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:endoplasmic reticulum;PBO S.X. H.G.
0.36 43.6 At1g67030 843022 ZFP6 (ZINC FINGER PROTEIN 6) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.33 38.1 At1g10480 837588 ZFP5 (ZINC FINGER PROTEIN 5) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.33 38.1 At4g14465 827093 DNA-binding protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.29 30.3 At2g04800 815024 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P S.X. H.G.
0.25 22.6 At1g44800 841044 nodulin MtN21 family protein F:molecular_function unknown;P:unknown;C:membrane;BOPAM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
69.5 99.9 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
62.3 99.8 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
60.2 99.8 GSM142626 MC002_ATH1_A2.1-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
54.8 99.8 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
48.9 99.8 GSM142632 MC002_ATH1_A4.1-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
46.6 99.8 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
46.4 99.8 GSM142661 MB002_ATH1_A1-Eland-ch1 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
45.6 99.8 GSM142639 MC002_ATH1_A6.2-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
44.6 99.8 GSM142640 MC002_ATH1_A6.3-dubos-5kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
40.6 99.8 GSM142658 MC002_ATH1_A12.3-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 0 684 At1g27020 839591 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP C.G. S.X.
0.02 1e-1 38 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. C.G. S.X.
0.03 1e-1 38 At2g42680 818868 MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A) One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. C.G. S.X.
0.02 5e-1 36 Atcg00490 - - large subunit of RUBISCO. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. C.G. S.X.
0.02 5e-1 36 At5g16800 831543 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOBPAFV C.G. S.X.
0.03 5e-1 36 At4g23680 828468 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.03 5e-1 36 At3g26390 822243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At4g31610 829288 REM1 (REPRODUCTIVE MERISTEM 1) Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 34 Glycine max HgAffx.14924.1.S1_at CB379665 - - 5e+0 At5g02440 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig2060_s_at Contig2060 - - 1e+0 At1g03950 VPS2.3 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2.3) C.G. S.X.
0.03 6e-2 40 Oryza sativa Os11g0676500 BI813523 - NBS-LRR type resistance protein (Fragment) 4e+0 At2g20520 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) C.G. S.X.
0.02 3e+0 34 Populus trichocarpa Ptp.3787.1.S1_at CV266227 hypothetical protein - 4e-12 At5g20990 B73 C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.128414.196.S1_at CA661623 RuBisCO large subunit - 8e-85 Atmg00280 - C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1610474_at CF211354 similar to KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter - 1e+0 At1g29950 transcription factor/ transcription regulator C.G. S.X.
0.02 5e-2 38 Zea mays Zm.10523.1.A1_at CF627457 hypothetical protein LOC100273216 - 3e-4 At4g17670 senescence-associated protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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