CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g26730

Gene name EXS family protein / ERD1/XPR1/SYG1 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.76 87.4 At1g26730 839214 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB S.X. H.G.
0.41 52.4 At3g05320 819696 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF S.X. H.G.
0.38 46.7 At1g50460 841468 HKL1 (HEXOKINASE-LIKE 1) F:hexokinase activity, fructokinase activity, glucokinase activity, ATP binding;P:response to salt stress, response to cold, response to osmotic stress;C:mitochondrion, plastid;MFPOB S.X. H.G.
0.36 43.6 At4g31000 829227 calmodulin-binding protein F:calmodulin binding;P:unknown;C:unknown;PM S.X. H.G.
0.30 32.1 At3g04220 819577 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMOBFAV S.X. H.G.
0.30 32.1 At1g14480 838010 protein binding F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVA S.X. H.G.
0.29 30.3 At2g44500 819057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.29 30.3 At5g64310 836552 AGP1 (ARABINOGALACTAN PROTEIN 1) Encodes arabinogalactan-protein (AGP1). S.X. H.G.
0.28 30.3 At4g33920 829536 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:mitochondrion, protein serine/threonine phosphatase complex;PMOFBV S.X. H.G.
0.27 26.2 At4g17615 827481 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
254.6 100.0 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
170.7 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
144.5 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
143.9 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
113.7 99.9 GSM131342 AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
70.8 99.9 E-MEXP-98-raw-cel-320188859
57.4 99.8 E-MEXP-98-raw-cel-320188804
57.1 99.8 GSM134206 Murray_3-3_D5-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
56.4 99.8 E-MEXP-98-raw-cel-320189024
52.9 99.8 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 2478 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB C.G. S.X.
0.47 6e-27 123 At4g25350 828638 SHB1 (SHORT HYPOCOTYL UNDER BLUE1) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development. C.G. S.X.
0.09 4e-19 97 At2g03260 814855 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane;FMPO C.G. S.X.
0.11 3e-16 87 At2g03250 814854 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane;MFPOB C.G. S.X.
0.13 3e-16 87 At1g14040 837965 - F:unknown;P:unknown;C:integral to membrane;FMPO C.G. S.X.
0.15 1e-12 75 At2g03240 814853 - F:unknown;P:unknown;C:integral to membrane;MFPO C.G. S.X.
0.07 5e-12 73 At1g69480 843280 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB C.G. S.X.
0.10 8e-8 59 At3g29060 822550 - F:unknown;P:unknown;C:integral to membrane;MFPOVBA C.G. S.X.
0.01 7e-2 40 At3g26380 822242 glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein F:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process;C:cell wall;MBFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 5e-10 67 Glycine max GmaAffx.77909.1.S1_at BG882051 - - 9e-11 At1g26730 EXS family protein / ERD1/XPR1/SYG1 family protein C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig8568_s_at Contig8568 - - 7e+0 At5g63440 unknown protein C.G. S.X.
0.01 4e-5 52 Oryza sativa Os02g0809800 AK063181.1 - - 5e-1 At2g34140 Dof-type zinc finger domain-containing protein C.G. S.X.
0.22 2e-9 65 Populus trichocarpa PtpAffx.209149.1.S1_x_at pmrna18114 pho1-like protein - 3e-16 At2g03240 - C.G. S.X.
0.04 3e-10 67 Triticum aestivum Ta.1006.1.S1_at CA630632 - - 4e+0 At3g23430 PHO1 (phosphate 1) C.G. S.X.
0.02 8e-2 38 Vitis vinifera 1620460_at BQ792558 hypothetical protein LOC100263447 - 3e-7 At3g54670 TTN8 (TITAN8) C.G. S.X.
0.04 3e-8 59 Zea mays Zm.11798.1.A1_at BM380830 - - 1e-6 At3g23430 PHO1 (phosphate 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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