CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g26665

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g26665 839207 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.57 73.8 At4g17730 827494 SYP23 (SYNTAXIN OF PLANTS 23) member of SYP2 Gene Family S.X. H.G.
0.29 30.3 At4g09830 826572 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). S.X. H.G.
0.25 22.6 At5g63190 836440 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.13 5.8 At1g05890 837099 zinc finger protein-related F:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MOFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.4 99.9 GSM133117 RIKEN-YAMAUCHI1A GSE5687 AtGenExpress: Different temperature treatment of seeds
56.5 99.8 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
52.0 99.8 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
37.6 99.7 GSM282703 arf2_brz_2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
36.5 99.7 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
33.0 99.7 GSM282694 arf2_mock_rep1 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
30.2 99.7 GSM282696 arf2_mock_rep3 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
29.9 99.7 GSM142662 MB002_ATH1_A2-Eland-ch2 GSE6153 Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
28.0 99.7 GSM282695 arf2_mock_rep2 GSE11216 Brassinazole treatment of arf2 and wild-type dark-grown seedlings
27.1 99.7 GSM245916 wild type dark replicate 1 GSE9728 COP9 signalosome (csn) mutant analysis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 1e-129 462 At5g41910 834196 RNA polymerase II mediator complex protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.02 3e-1 36 At2g17670 816274 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA C.G. S.X.
0.02 3e-1 36 At2g39760 818561 BPM3 F:protein binding;P:biological_process unknown;C:unknown;MPOFV C.G. S.X.
0.02 3e-1 36 At1g75300 843867 isoflavone reductase, putative encodes a protein whose sequence is similar to an isoflavone reductase C.G. S.X.
0.02 1e+0 34 At3g02380 821298 COL2 (constans-like 2) homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e-5 50 Glycine max Gma.4604.1.S1_at CA802306 - - 3e-47 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding C.G. S.X.
0.17 6e-4 44 Hordeum vulgare Contig8868_at Contig8868 - - 4e-8 At5g41910 RNA polymerase II mediator complex protein-related C.G. S.X.
0.07 4e-2 40 Oryza sativa Os09g0528300 AK121125.1 - Conserved hypothetical protein 1e-1 At1g26665 - C.G. S.X.
0.22 7e-15 81 Populus trichocarpa Ptp.59.1.S1_at CA932099 hypothetical protein - 2e-15 At5g41910 RNA polymerase II mediator complex protein-related C.G. S.X.
0.14 3e-4 46 Triticum aestivum Ta.14547.1.S1_at BJ317926 - - 6e-4 At1g26665 - C.G. S.X.
0.13 7e-21 99 Vitis vinifera 1612815_at CB972191 hypothetical protein LOC100263293 - 4e-17 At5g41910 RNA polymerase II mediator complex protein-related C.G. S.X.
0.14 5e-4 44 Zea mays Zm.12345.1.A1_a_at BM416967 mediator complex subunit 10 CG5057-PA - 2e-3 At1g26665 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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