CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g26560

Gene name BGLU40 (BETA GLUCOSIDASE 40)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g26560 839196 BGLU40 (BETA GLUCOSIDASE 40) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:apoplast, chloroplast;BOPMFA S.X. H.G.
0.22 17.5 At5g57030 835806 LUT2 (LUTEIN DEFICIENT 2) Lutein-deficient 2 (LUT2) required for lutein biosynthesis, member of the xanthophyll class of carotenoids. Encodes lycopene epsilon cyclase S.X. H.G.
0.07 1.9 At3g01180 820294 AtSS2 (starch synthase 2) F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAV S.X. H.G.
0.07 1.9 At4g34240 829573 ALDH3I1 (ALDEHYDE DEHYDROGENASE 3|1) Aldehyde dehydrogenase induced by ABA and dehydration S.X. H.G.
0.06 1.4 At5g17230 831587 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase Encodes phytoene synthase. S.X. H.G.
0.05 1.1 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.4 99.8 GSM131135 AtGen_B-21_2-7-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
36.7 99.7 GSM131145 AtGen_B-31_3-3-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
33.8 99.7 GSM142840 MG001_ATH1_A1-Torres-1N1 GSE6176 Impact of Type III effectors on plant defense responses
30.4 99.7 E-ATMX-6-raw-cel-1308219150
26.5 99.7 GSM131129 AtGen_B-15_2-1-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
26.1 99.7 E-ATMX-33-raw-cel-1562596264
25.4 99.6 GSM131144 AtGen_B-30_3-2-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
21.7 99.6 GSM131130 AtGen_B-16_2-2-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
17.8 99.5 GSM131149 AtGen_B-35_3-7-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
16.7 99.5 GSM131147 AtGen_B-33_3-5-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 5e-8 59 At5g54570 835545 BGLU41 (BETA GLUCOSIDASE 41) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:plant-type cell wall;BOPMFA C.G. S.X.
0.05 5e-8 59 At3g18070 821332 BGLU43 (BETA GLUCOSIDASE 43) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA C.G. S.X.
0.03 2e-7 57 At5g25980 832667 TGG2 (GLUCOSIDE GLUCOHYDROLASE 2) Myrosinase (thioglucoside glucohydrolase) gene involved in glucosinoloate metabolism. C.G. S.X.
0.02 3e-6 54 At3g60130 825183 BGLU16 (BETA GLUCOSIDASE 16) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:unknown;BOPMFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 5e-18 93 Glycine max GmaAffx.20675.1.S1_at BM954626 - - 2e-18 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.06 6e-3 42 Hordeum vulgare Contig19573_at Contig19573 - - 5e-3 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.17 7e-12 73 Oryza sativa Os03g0212800 AY129294.1 - Beta-glucosidase 5e-12 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.40 6e-27 123 Populus trichocarpa PtpAffx.209127.1.S1_at pmrna18058 hypothetical protein - 4e-27 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.07 2e-4 48 Triticum aestivum TaAffx.119729.1.S1_at BJ260442 - - 7e-5 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.16 3e-10 65 Vitis vinifera 1620808_at AY039034.1 beta-glucosidase - 4e-10 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
0.10 9e-5 48 Zea mays Zm.17234.1.S1_at CK145263 hypothetical protein LOC100192939 - 2e-4 At1g26560 BGLU40 (BETA GLUCOSIDASE 40) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00460 Cyanoamino acid metabolism
00500 Starch and sucrose metabolism
00940 Phenylpropanoid biosynthesis
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