CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g26450

Gene name beta-1,3-glucanase-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At1g26450 839186 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;OMFPBVA S.X. H.G.
0.75 86.9 At1g74055 843745 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.71 84.2 At5g24800 832549 BZIP9 (BASIC LEUCINE ZIPPER 9) Encodes bZIP protein BZO2H2. S.X. H.G.
0.67 81.6 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA S.X. H.G.
0.61 76.7 At3g14780 820706 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMBFAV S.X. H.G.
0.40 50.8 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA S.X. H.G.
0.38 46.7 At1g73850 843721 structural constituent of ribosome F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;OMFPBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
405.6 100.0 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
303.8 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
246.2 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
229.9 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
161.0 99.9 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
141.6 99.9 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
102.5 99.9 GSM184932 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
88.3 99.9 GSM184934 Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
87.1 99.9 GSM184935 Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
76.8 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.30 1e-28 127 At1g69295 843261 PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose. C.G. S.X.
0.05 3e-4 46 At2g03505 814879 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO C.G. S.X.
0.06 5e-3 42 At1g13830 837944 beta-1,3-glucanase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBMOFVA C.G. S.X.
0.03 2e-2 40 At2g38680 818450 5'-nucleotidase/ magnesium ion binding F:magnesium ion binding, 5'-nucleotidase activity;P:biological_process unknown;C:cytoplasm;MOP C.G. S.X.
0.02 7e-2 38 At5g43190 834337 F-box family protein (FBX6) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;PFO C.G. S.X.
0.02 7e-2 38 At4g33410 829478 signal peptide peptidase family protein F:aspartic-type endopeptidase activity;P:biological_process unknown;C:endomembrane system, integral to membrane;MPOF C.G. S.X.
0.04 7e-2 38 At2g28625 2745569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 7e-2 38 At1g05060 839336 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;P C.G. S.X.
0.03 3e-1 36 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Glycine max PsAffx.C285000005_at PsAffx.C285000005 - - 4e+0 At2g07000 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig1519_s_at Contig1519 - - 3e-2 At4g19100 unknown protein C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.28358.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.218224.1.S1_x_at pmrna33774 hypothetical protein - 2e+0 At3g51325 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 1e+0 34 Triticum aestivum TaAffx.5651.1.S1_at CA703738 - - 6e-1 At1g26450 beta-1,3-glucanase-related C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1606651_at CB348536 - - 4e+0 At3g15280 unknown protein C.G. S.X.
0.03 8e+0 30 Zea mays ZmAffx.49.1.A1_at AI664982 - - 3e+0 At5g09570 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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