Gene omics information

Query gene ID At1g25560
Gene name TEM1 (TEMPRANILLO 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3541.6At1g25560839143TEM1 (TEMPRANILLO 1)Encodes a member of the RAV transcription factor family that contains AP2 and B3 binding domains. Involved in the regulation of flowering under long days. Loss of function results in early flowering. Overexpression causes late flowering and repression of expression of FT.S.X.H.G.
0.4862.5At1g13260837886RAV1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.S.X.H.G.
0.3846.7At4g36500829802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.3541.6At1g68840843216RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE)Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)S.X.H.G.
0.3133.8At5g46710834714zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;POMS.X.H.G.
0.3032.1At5g06320830520NHL3encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.S.X.H.G.
0.3032.1At5g67300836865MYBR1 (MYB DOMAIN PROTEIN R1)Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.S.X.H.G.
0.2522.6At2g27500817295glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, nucleus, cytoplasm;PFOS.X.H.G.
0.2319.3At2g41100818709TCH3 (TOUCH 3)encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers.S.X.H.G.
0.2115.8At4g18010827526AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2)Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
74.999.9E-MEXP-807-raw-cel-1173273196
53.399.8E-MEXP-807-raw-cel-1173272948
48.699.8E-MEXP-807-raw-cel-1173273170
40.399.8E-MEXP-98-raw-cel-320188804
37.299.7E-MEXP-98-raw-cel-320189024
33.799.7E-MEXP-98-raw-cel-320188859
32.699.7E-MEXP-807-raw-cel-1173273223
31.299.7E-MEXP-98-raw-cel-320189079
29.399.7E-MEXP-807-raw-cel-1173273116
28.599.7E-MEXP-807-raw-cel-1173273088
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.532e-56220At1g68840843216RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE)Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE)C.G.S.X.
0.341e-23111At1g13260837886RAV1Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.C.G.S.X.
0.315e-23109At3g25730822164AP2 domain-containing transcription factor, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;POC.G.S.X.
0.101e-757At3g11580820331DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PC.G.S.X.
0.064e-550At2g46870819300NGA1 (NGATHA1)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PC.G.S.X.
0.076e-446At3g61970825370NGA2 (NGATHA2)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PC.G.S.X.
0.112e-344At5g06250830512transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.202e-26121Glycine maxGmaAffx.16227.1.S1_atAW133007RAV-like DNA-binding protein-7e-27At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.132e-859Hordeum vulgareContig19699_atContig19699--3e-8At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.132e-1171Oryza sativaOs.8019.1.S1_at---0C.G.S.X.
0.163e-963Populus trichocarpaPtpAffx.572.2.S1_atCV242379AP2 domain-containing transcription factor-3e-9At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
0.124e-859Triticum aestivumTa.27316.1.S1_atBT009310.1--2e-10At1g68840RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE)C.G.S.X.
0.072e-1065Vitis vinifera1618998_atCF204007.1--5e-16At4g01500NGA4 (NGATHA4)C.G.S.X.
0.124e-1271Zea maysZm.12114.1.S1_atBM379167DNA-binding protein RAV1-1e-11At1g25560TEM1 (TEMPRANILLO 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
NGO:0009873A series of molecular signals mediated by ethylene (ethene).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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