CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g25510

Gene name aspartyl protease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.43 55.3 At1g25510 839137 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO S.X. H.G.
0.48 62.5 At1g51460 841571 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV S.X. H.G.
0.42 53.9 At3g08770 820024 LTP6 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. S.X. H.G.
0.35 41.6 At5g20740 832197 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.35 41.6 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO S.X. H.G.
0.31 33.8 At5g39220 833918 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPAF S.X. H.G.
0.30 32.1 At3g04960 819656 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
0.27 26.2 At3g18850 821418 LPAT5 F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPV S.X. H.G.
0.26 24.4 At2g42200 818820 SPL9 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 9) Encodes a putative transcriptional regulator that is involved in the vegetative to reproductive phase transition. Expresssion is regulated by MIR156b. S.X. H.G.
0.23 19.3 At5g07280 830619 EMS1 (EXCESS MICROSPOROCYTES1) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiation S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
116.3 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
115.5 99.9 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
111.8 99.9 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
84.3 99.9 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
55.7 99.8 GSM131631 ATGE_58_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
51.6 99.8 GSM131630 ATGE_58_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
49.0 99.8 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
48.6 99.8 GSM131632 ATGE_58_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
46.7 99.8 E-MEXP-1592-raw-cel-1617526856
43.0 99.8 GSM133776 Lindsey_1-1_globular-apical_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 5e-5 50 At3g18490 821379 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOB C.G. S.X.
0.03 1e-2 42 At1g01300 839375 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO C.G. S.X.
0.03 2e-1 38 At2g16015 816098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown C.G. S.X.
0.01 2e-1 38 At1g72790 843610 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVA C.G. S.X.
0.01 7e-1 36 At4g21910 828280 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM C.G. S.X.
0.01 7e-1 36 At4g00300 828072 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PFMOB C.G. S.X.
0.01 7e-1 36 At3g24503 822042 ALDH2C4 Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 1e-3 46 Glycine max Gma.1274.1.S1_at AI794662 - - 3e-7 At3g18490 aspartyl protease family protein C.G. S.X.
0.03 4e-4 46 Hordeum vulgare Contig11988_at Contig11988 - - 1e-1 At3g18490 aspartyl protease family protein C.G. S.X.
0.06 9e-2 40 Oryza sativa Os01g0140100 AK068990.1 - Peptidase A1, pepsin family protein 6e-5 At3g18490 aspartyl protease family protein C.G. S.X.
0.09 2e-14 81 Populus trichocarpa PtpAffx.208004.1.S1_at pmrna15886 - - 1e-14 At1g25510 aspartyl protease family protein C.G. S.X.
0.03 5e-2 40 Triticum aestivum Ta.16304.1.S1_at CA604423 - - 6e-2 At3g18490 aspartyl protease family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1607752_at CF513611 hypothetical protein LOC100259452 - 7e-12 At3g18490 aspartyl protease family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.12763.1.S1_at CA398371 - - 1e+0 At5g47760 ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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