CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g25400

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g25400 839126 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P S.X. H.G.
0.61 76.7 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.54 69.5 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.53 68.6 At4g17615 827481 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) Member of AtCBL (Calcineurin B-like Calcium Sensor Proteins) family. Protein level is increased upon high salt, mannitol, and cold stresses. CBL1 interacts with CIPK23 and recruits the kinase to the plasma membrane where the substrate(s) of CIPK23 may reside. CBL1 localization is regulated by protein modification including myristolation and acylation. S.X. H.G.
0.50 65.3 At2g40000 818588 HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) F:molecular_function unknown;P:response to oxidative stress, defense response to bacterium, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;PO S.X. H.G.
0.49 63.5 At4g24160 828516 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMFPA S.X. H.G.
0.49 63.5 At5g14730 831325 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.49 63.5 At5g54490 835537 PBP1 (PINOID-BINDING PROTEIN 1) Encodes a PINOID (PID)-binding protein containing putative EF-hand calcium-binding motifs. The interaction is dependent on the presence of calcium. mRNA expression is up-regulated by auxin. Not a phosphorylation target of PID, likely acts upstream of PID to regulate the activity of this protein in response to changes in calcium levels. S.X. H.G.
0.48 62.5 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
296.2 100.0 E-MEXP-1443-raw-cel-1581869632
152.9 99.9 E-MEXP-1443-raw-cel-1581869688
147.3 99.9 E-MEXP-807-raw-cel-1173273060
144.6 99.9 E-MEXP-807-raw-cel-1173273170
143.1 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
138.2 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
131.2 99.9 E-MEXP-807-raw-cel-1173273116
123.3 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
122.4 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
113.9 99.9 E-MEXP-807-raw-cel-1173273223
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.17 5e-7 56 At1g68440 843173 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.01 1e-1 38 At5g55820 835676 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.01 4e-1 36 At3g61800 825353 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBFAV C.G. S.X.
0.02 4e-1 36 At2g30440 817595 chloroplast thylakoidal processing peptidase F:serine-type peptidase activity, peptidase activity;P:proteolysis;C:membrane;BOMPF C.G. S.X.
0.01 2e+0 34 At5g25050 832576 integral membrane transporter family protein F:transporter activity;P:transport;C:membrane;OPBMF C.G. S.X.
0.01 2e+0 34 At5g49740 835037 ATFRO7 (FERRIC REDUCTION OXIDASE 7) Encodes a chloroplast ferric chelate reductase. Shows differential splicing and has three different mRNA products. Expressed in the shoot, flower and cotyledon. C.G. S.X.
0.01 2e+0 34 At5g49840 835047 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding F:protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein transport;C:unknown;BOMFPA C.G. S.X.
0.02 2e+0 34 At5g16170 831475 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max Gma.16644.1.S1_at BM094345 - - 2e-1 At5g47170 unknown protein C.G. S.X.
0.03 8e-1 34 Hordeum vulgare Contig21540_at Contig21540 - - 7e-1 At4g11260 SGT1B C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.28663.1.S1_at - - - 0 C.G. S.X.
0.04 2e-7 57 Populus trichocarpa PtpAffx.158803.1.S1_s_at CX179737 hypothetical protein - 2e-6 At1g68440 unknown protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.6514.1.S1_at CA745379 - - 2e+0 At1g25400 unknown protein C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1616958_s_at CF371819 hypothetical protein LOC100248073 - 1e-3 Atmg00840 - C.G. S.X.
0.04 1e+1 30 Zea mays ZmAffx.335.1.A1_at AI670522 - - 7e-2 At3g13130 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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