CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g24807

Gene name anthranilate synthase beta subunit, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g24807 839085 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMP S.X. H.G.
1.00 100.0 At5g05730 830457 ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1) ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots. S.X. H.G.
0.91 95.6 At3g54640 824629 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN) Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). S.X. H.G.
0.89 94.6 At2g04400 814980 indole-3-glycerol phosphate synthase (IGPS) F:indole-3-glycerol-phosphate synthase activity;P:tryptophan biosynthetic process;C:chloroplast;BOAFP S.X. H.G.
0.80 89.8 At5g17990 831666 TRP1 (tryptophan biosynthesis 1) Encodes the tryptophan biosynthetic enzyme phosphoribosylanthranilate transferase (PAT1, called trpD in bacteria). Converts anthranilate and phosphoribosylpyrophosphate into phosphoribosylanthranilate and inorganic pyrophosphate. S.X. H.G.
0.59 74.7 At1g10700 837613 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) F:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;BOMFAPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
48.9 99.8 GSM131161 AtGen_C-11_2-Pi-6_REP2_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
45.4 99.8 GSM131160 AtGen_C-10_1-Pi-6_REP1_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
44.6 99.8 GSM131162 AtGen_C-12_3-Pi-6_REP3_ATH1 GSE5616 AtGenExpress: Response to Phytophthora infestans
42.2 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
35.8 99.7 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
34.0 99.7 GSM142837 MG001_ATH1_A16-Torres-6N1 GSE6176 Impact of Type III effectors on plant defense responses
33.7 99.7 E-NASC-76-raw-cel-1359879158
33.2 99.7 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
31.6 99.7 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
31.3 99.7 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 0 1118 At1g25155 839099 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:unknown;BOFAMP C.G. S.X.
0.97 0 1118 At1g24909 839089 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:unknown;BOFAMP C.G. S.X.
0.97 0 1118 At1g25083 839095 anthranilate synthase beta subunit, putative F:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:unknown;BOFAMP C.G. S.X.
0.85 0 1023 At1g25220 839103 ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2). C.G. S.X.
0.83 0 971 At5g57890 835900 anthranilate synthase beta subunit, putative F:anthranilate synthase activity;P:tryptophan biosynthetic process, response to bacterium;C:unknown;BOFMAP C.G. S.X.
0.01 3e-1 36 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene C.G. S.X.
0.01 3e-1 36 At4g27370 828845 VIIIB member of Myosin-like proteins C.G. S.X.
0.01 1e+0 34 At4g15720 827250 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 2e-52 206 Glycine max Gma.4358.1.S1_at BM308967 - - 2e-52 At1g25155 anthranilate synthase beta subunit, putative C.G. S.X.
0.19 5e-8 57 Hordeum vulgare Contig8200_at Contig8200 - - 2e-7 At1g25220 ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) C.G. S.X.
0.21 3e-9 63 Oryza sativa Os03g0718000 AK105178.1 - Anthranilate synthase beta subunit (EC 4.1.3.27)(At1g25220) 3e-9 At1g25220 ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) C.G. S.X.
0.40 7e-28 125 Populus trichocarpa PtpAffx.208095.1.S1_at pmrna16078 - - 1e-28 At5g57890 anthranilate synthase beta subunit, putative C.G. S.X.
0.21 1e-3 44 Triticum aestivum Ta.24576.1.A1_at BQ483083 - - 5e-6 At1g25220 ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1) C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1618458_at BQ792055 - - 8e-1 At1g36925 unknown protein C.G. S.X.
0.17 2e-7 56 Zea mays Zm.10219.2.A1_at M95067.1 hypothetical LOC542286 - 1e-7 At1g25155 anthranilate synthase beta subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006541 The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
01061 Biosynthesis of phenylpropanoids
01063 Biosynthesis of alkaloids derived from shikimate pathway
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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