Gene omics information

Query gene ID At1g24735
Gene name O-methyltransferase
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g24735839082O-methyltransferaseF:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFAS.X.H.G.
0.9195.6At5g55240835617caleosin-related family protein / embryo-specific protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.9195.6At5g01670831701aldose reductase, putativeF:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPAS.X.H.G.
0.9195.6At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.S.X.H.G.
0.9095.1At1g29680839845unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPFS.X.H.G.
0.8994.6At4g10020826593AtHSD5 (hydroxysteroid dehydrogenase 5)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.8994.6At5g55750835669hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVAS.X.H.G.
0.8994.6At1g77950844130AGL67 (AGAMOUS-LIKE 67)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFOS.X.H.G.
0.8894.0At2g33520817917-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
0.8894.0At3g56350824802superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeF:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
457.6100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
349.6100.0GSM10456WT Post-Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
267.3100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
233.7100.0GSM10454WT Post-Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
227.5100.0GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
167.7100.0GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
157.199.9GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
154.199.9GSM131705ATGE_83_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
137.499.9GSM131702ATGE_82_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
137.299.9GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.498e-42171At1g67980843126CCoAMTEncodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.C.G.S.X.
0.098e-1167At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.C.G.S.X.
0.037e-238At3g51430824306YLS2strictosidine synthase-like proteinC.G.S.X.
0.023e-136At5g60440836165AGL62 (Agamous-like 62)AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.C.G.S.X.
0.023e-136At5g26680832721endonuclease, putativeF:5'-3' exonuclease activity, DNA binding, catalytic activity, nuclease activity;P:DNA repair;C:unknown;OMFBAPVC.G.S.X.
0.021e+034At5g54900835581ATRBP45A (RNA-binding protein 45A)F:RNA binding;P:unknown;C:unknown;MPFOBAC.G.S.X.
0.011e+034At2g25930817134ELF3 (EARLY FLOWERING 3)Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions.C.G.S.X.
0.021e+034At1g15170838083MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:chloroplast, membrane;BOPFMAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e+034Glycine maxGmaAffx.81907.1.S1_atBG726145--8e-1At1g24735O-methyltransferaseC.G.S.X.
0.041e-136Hordeum vulgareHK06O22r_s_atHK06O22r--3e+0At5g34829unknown proteinC.G.S.X.
0.032e+034Oryza sativaOs06g0165800AK065744.1-Caffeoyl-CoA O-methyltransferase 5 (EC 2.1.1.104)(Trans-caffeoyl-CoA 3-O-methyltransferase 5) (CCoAMT-5)(CCoAOMT-5)1e-7At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeC.G.S.X.
0.064e-136Populus trichocarpaPtp.2812.1.S1_atCV262496--4e-1At1g24735O-methyltransferaseC.G.S.X.
0.042e+130Triticum aestivumTaAffx.4545.1.S1_atCA738424--5e-1At5g33393unknown proteinC.G.S.X.
0.042e+128Vitis vinifera1622727_atCB975534hypothetical protein LOC100254910-1e+1At5g20010RAN-1C.G.S.X.
0.038e+030Zea maysZmAffx.457.1.A1_atAI677203hypothetical protein LOC100276133-3e+0At4g20470unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00064Link to KaPPA-View 4The cinnamate-monolignol pathway/sinapoyl ester biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00940Link to KEGG PATHWAYPhenylpropanoid biosynthesis
00941Link to KEGG PATHWAYFlavonoid biosynthesis
00945Link to KEGG PATHWAYStilbenoid, diarylheptanoid and gingerol biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01100Link to KEGG PATHWAYMetabolic pathways
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