Gene omics information

Query gene ID At1g24540
Gene name CYP86C1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6075.7At1g24540839069CYP86C1member of CYP86CS.X.H.G.
0.9797.6At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.9496.7At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVS.X.H.G.
0.8894.0At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.8894.0At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.S.X.H.G.
0.8290.9At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterS.X.H.G.
0.7989.1At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.S.X.H.G.
0.7888.6At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFS.X.H.G.
0.7486.1At5g51950835270glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVAS.X.H.G.
0.7486.1At2g46960819310CYP709B1member of CYP709BS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
471.8100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
430.5100.0GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
376.3100.0GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
349.2100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
347.6100.0GSM311284Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
343.1100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
331.6100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
308.9100.0GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
305.6100.0GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
217.4100.0GSM284397Arabidopsis GGSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.142e-1067At3g26125822212CYP86C2encodes a protein with cytochrome P450 domainC.G.S.X.
0.091e-861At1g13140837871CYP86C3member of CYP86CC.G.S.X.
0.083e-654At1g13150837873CYP86C4member of CYP86CC.G.S.X.
0.028e-446At5g63450836464CYP94B1member of CYP94BC.G.S.X.
0.011e-242At2g21910816727CYP96A5member of CYP96AC.G.S.X.
0.015e-240At3g48520824011CYP94B3member of CYP94BC.G.S.X.
0.055e-240At2g45970819205CYP86A8Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems.C.G.S.X.
0.015e-240At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e+036Glycine maxGmaAffx.78496.1.S1_atBM085121--3e-1At1g24540CYP86C1C.G.S.X.
0.024e-446Hordeum vulgareContig9178_atContig9178--9e-6At3g26125CYP86C2C.G.S.X.
0.023e-242Oryza sativaOs02g05321009630.m03128--3e-7At5g57620MYB36 (myb domain protein 36)C.G.S.X.
0.101e-1275Populus trichocarpaPtpAffx.208653.1.S1_atpmrna17173cytochrome P450-8e-4At1g13150CYP86C4C.G.S.X.
0.032e-138Triticum aestivumTa.20458.1.A1_atCA741413--9e-2At1g24540CYP86C1C.G.S.X.
0.042e-136Vitis vinifera1612325_atCF403395hypothetical protein LOC100266173-2e-1At1g24540CYP86C1C.G.S.X.
0.025e+032Zea maysZmAffx.188.1.A1_atAI668391hypothetical protein LOC100216777-3e-6At1g13690ATE1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00347Link to KaPPA-View 4Cytochrome P450



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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