CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g24280

Gene name G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g24280 839044 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. S.X. H.G.
0.91 95.6 At1g30510 839930 ATRFNR2 (ROOT FNR 2) Encodes a root-type ferredoxin:NADP(H) oxidoreductase. S.X. H.G.
0.91 95.6 At1g78050 844140 PGM (PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE) F:intramolecular transferase activity, phosphotransferases, catalytic activity;P:response to nitrate, metabolic process;C:chloroplast;BOMFPA S.X. H.G.
0.67 81.6 At5g41670 834169 6-phosphogluconate dehydrogenase family protein F:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAV S.X. H.G.
0.33 38.1 At5g13110 831150 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. S.X. H.G.
0.33 38.1 At5g13420 831183 transaldolase, putative F:catalytic activity, transaldolase activity;P:response to cadmium ion;C:mitochondrion, chloroplast stroma, chloroplast;BOPMAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
140.8 99.9 GSM184508 Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
116.3 99.9 GSM184509 Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
91.6 99.9 GSM184511 Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
89.5 99.9 GSM218591 Whole roots 3.5hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
88.1 99.9 GSM184543 Whole roots 2hr KNO3 treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
87.9 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
85.4 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.7 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
64.6 99.8 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
64.4 99.8 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 0 1507 At5g13110 831150 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. C.G. S.X.
0.20 3e-10 67 At5g35790 833559 G6PD1 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 1) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root. C.G. S.X.
0.04 4e-6 54 At1g09420 837465 G6PD4 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 4) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally. C.G. S.X.
0.01 4e-3 44 At5g40760 834076 G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6) Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. C.G. S.X.
0.05 4e-3 44 At3g27300 822349 G6PD5 (glucose-6-phosphate dehydrogenase 5) F:glucose-6-phosphate dehydrogenase activity;P:response to cadmium ion, pentose-phosphate shunt, oxidative branch, glucose metabolic process;C:cytosol, chloroplast;BOMPFV C.G. S.X.
0.01 2e-1 38 At5g06670 830555 ATP binding / microtubule motor F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOFBPAV C.G. S.X.
0.01 2e-1 38 At4g34220 829571 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 1e-16 89 Glycine max GmaAffx.83227.1.S1_at BQ629590 - - 7e-33 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) C.G. S.X.
0.03 3e-2 40 Hordeum vulgare Contig3308_at Contig3308 - - 5e-27 At3g27300 G6PD5 (glucose-6-phosphate dehydrogenase 5) C.G. S.X.
0.47 1e-96 355 Oryza sativa Os07g0406300 AK064867.1 - Glucose-6-phosphate 1-dehydrogenase precursor (EC1.1.1.49) 9e-97 At1g24280 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) C.G. S.X.
0.62 2e-125 450 Populus trichocarpa Ptp.4667.1.S1_s_at BU875168 hypothetical protein - 2e-151 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) C.G. S.X.
0.29 1e-40 169 Triticum aestivum Ta.5177.3.S1_a_at CK208859 - - 7e-39 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) C.G. S.X.
0.20 2e-51 202 Vitis vinifera 1614153_at CF207979 hypothetical protein LOC100267681 - 6e-43 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) C.G. S.X.
0.36 2e-46 186 Zea mays Zm.15767.1.S1_at AY107084.1 - - 6e-46 At1g24280 G6PD3 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006006 The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
X GO:0009051 The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00117 Pentose phosphate cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00030 Pentose phosphate pathway
00480 Glutathione metabolism
01065 Biosynthesis of alkaloids derived from histidine and purine
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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