Gene omics information

Query gene ID At1g24260
Gene name SEP3 (SEPALLATA3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5873.8At1g24260839040SEP3 (SEPALLATA3)Member of the MADs box transcription factor family. SEP3 is redundant with SEP1 and 2. Flowers of SEP1/2/3 triple mutants show a conversion of petals and stamens to sepals.SEP3 forms heterotetrameric complexes with other MADS box family members and binds to the CArG box motif.S.X.H.G.
0.9396.4At3g10570820222CYP77A6member of CYP77AS.X.H.G.
0.9396.4At5g45960834636GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.9396.4At1g58430842212RXF26Encodes an anther-specific proline-rich protein.S.X.H.G.
0.9296.0At2g42990818901GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
0.8994.6At1g63710842675CYP86A7Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers.S.X.H.G.
0.8994.6At5g55720835666pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFOS.X.H.G.
0.8693.1At1g12570837814glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAS.X.H.G.
0.8592.4At2g04570814999GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.8592.4At5g33370833315GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
85.399.9GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
74.799.9GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
65.699.8GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
56.399.8GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
51.899.8GSM62702arf6 arf8 flowers_stage 1-10GSE2848Auxin Response Factor mediated flower gene expression
48.799.8GSM10478lec1-1 24-Hr Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
48.199.8GSM10477lec1-1 24-Hr Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
44.399.8GSM10445WT 24-Hr Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
42.199.8GSM131632ATGE_58_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
40.699.8GSM47019Ler 9GSE2473Small RNA biogenesis mutants
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.232e-33143At5g15800831436SEP1 (SEPALLATA1)Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.C.G.S.X.
0.195e-31135At2g45650819173AGL6 (AGAMOUS-LIKE 6)sequence suggests this encodes a MADS-box transcription factorC.G.S.X.
0.328e-21101At3g02310821151SEP2 (SEPALLATA 2)MADS-box protein, binds K domain of AG in vivoC.G.S.X.
0.143e-2099At2g03710814898SEP4 (SEPALLATA 4)This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity.C.G.S.X.
0.112e-1893At1g26310839172CAL (CAULIFLOWER)Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.292e-40167Glycine maxGmaAffx.52757.1.S1_atBQ785411MADS transcription factor-9e-40At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.148e-754Hordeum vulgareContig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.181e-1171Oryza sativaOs09g0507200U78892.1-MADS box protein1e-20At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.363e-79295Populus trichocarpaPtpAffx.50213.1.S1_atAY235222.1hypothetical protein-2e-75At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.122e-344Triticum aestivumTa.13865.1.S1_atAF543316.1MADS box protein-3e-9At5g15800SEP1 (SEPALLATA1)C.G.S.X.
0.159e-2199Vitis vinifera1615428_atAF373601.1MADS-box protein 2-2e-40At5g15800SEP1 (SEPALLATA1)C.G.S.X.
0.062e-136Zea maysZm.1703.1.S1_atCO522762M27 protein-6e-9At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010093The process by which the identity of a floral organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
XGO:0048833Any process that modulates the number of floral organs formed in a floral whorl.
XGO:0001708The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
SGO:0009908The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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