CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g24140

Gene name matrixin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g24140 839026 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVAF S.X. H.G.
0.67 81.6 At1g72520 843584 lipoxygenase, putative F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:growth, jasmonic acid biosynthetic process, response to wounding, defense response;C:chloroplast;PMBFO S.X. H.G.
0.60 75.7 At3g01830 820033 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB S.X. H.G.
0.53 68.6 At2g25735 817115 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.44 57.2 At1g58420 842211 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
230.0 100.0 E-MEXP-807-raw-cel-1173273170
176.3 100.0 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
168.9 100.0 E-MEXP-807-raw-cel-1173273144
143.4 99.9 E-MEXP-807-raw-cel-1173273252
126.5 99.9 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
101.0 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
85.2 99.9 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
84.1 99.9 E-MEXP-807-raw-cel-1173273116
71.9 99.9 GSM39213 RRE2_Chitin3 GSE2169 rre1 and rre2 mutants
69.8 99.9 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 8e-28 125 At1g70170 843353 MMP (MATRIX METALLOPROTEINASE) mutant has Late flowering; Early senescence; Matrix Metalloproteinase C.G. S.X.
0.12 4e-11 69 At1g59970 842291 matrixin family protein F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:plasma membrane, anchored to membrane;MOPBVFA C.G. S.X.
0.05 2e-7 57 At2g45040 819111 matrix metalloproteinase F:metallopeptidase activity, metalloendopeptidase activity;P:proteolysis, metabolic process;C:anchored to membrane;MOPBVFA C.G. S.X.
0.01 6e-1 36 At5g62690 836390 TUB2 encodes tubulin beta-2/beta-3 chain C.G. S.X.
0.02 6e-1 36 At1g64380 842745 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. C.G. S.X.
0.01 2e+0 34 At5g09410 830800 EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN) calmodulin-binding protein, similar to another ethylene-upregulated calmodulin-binding protein ER1 GI:11612392 from (Nicotiana tabacum) C.G. S.X.
0.02 2e+0 34 At4g12060 826814 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP C.G. S.X.
0.02 2e+0 34 At3g19900 821528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-4 46 Glycine max GmaAffx.21553.1.S1_at BE023327 - - 2e-9 At2g45040 matrix metalloproteinase C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig20753_at Contig20753 - - 5e-7 At2g20900 diacylglycerol kinase, putative C.G. S.X.
0.06 7e-5 50 Oryza sativa Os02g0740700 AK065964.1 - Peptidase M10A and M12B, matrixin and adamalysinfamily protein 1e-2 At2g45040 matrix metalloproteinase C.G. S.X.
0.06 8e-1 36 Populus trichocarpa PtpAffx.212915.1.S1_at pmrna25269 hypothetical protein - 2e-3 At1g59970 matrixin family protein C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.8713.1.S1_at CA621201 - - 6e-4 At2g30560 glycine-rich protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622667_at CF568939 - - 1e+0 At3g27329 - C.G. S.X.
0.02 4e+0 32 Zea mays Zm.9431.1.A1_at BM337524 - - 1e+0 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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