Gene omics information

Query gene ID At1g24090
Gene name RNase H domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2930.3At1g24090839020RNase H domain-containing proteinF:ribonuclease H activity, nucleic acid binding;P:biological_process unknown;C:unknown;PBOAMS.X.H.G.
0.4659.8At2g21640816702-Encodes a protein of unknown function that is a marker for oxidative stress response.S.X.H.G.
0.4050.8At1g32870840181ANAC13 (Arabidopsis thaliana NAC domain protein 13)F:transcription factor activity;P:multicellular organismal development, response to UV-B, response to red light;C:cellular_component unknown;POMFS.X.H.G.
0.3338.1At4g27940828907mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOS.X.H.G.
0.2930.3At2g47000819314ABCB4 (ATP BINDING CASSETTE SUBFAMILY B4)Multidrug resistance P-glycoprotein (MDR/PGP) subfamily of ABC transporters. Functions in the basipetal redirection of auxin from the root tip. Exhibits apolar plasma membrane localization in the root cap and polar localization in tissues above.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
327.7100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
198.2100.0GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
168.4100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
112.099.9GSM13784Cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
103.799.9E-MEXP-739-raw-cel-1099467339
94.199.9GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
92.499.9GSM13779Dexamethasone plus cycloheximideGSE911Identification of LEAFY targets during reproductive transition
91.799.9GSM13780CycloheximideGSE911Identification of LEAFY targets during reproductive transition
90.399.9GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
79.999.9GSM13783Dexamethasone plus cycloheximide - replicateGSE911Identification of LEAFY targets during reproductive transition
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.539e-118424At5g51080835181RNase H domain-containing proteinF:ribonuclease H activity, nuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PBOAMC.G.S.X.
0.015e-240At1g13160837874SDA1 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;BMOFPVAC.G.S.X.
0.018e-136At2g01950814726BRL2 (BRI1-LIKE 2)Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.C.G.S.X.
0.018e-136At1g10240837563FRS11 (FAR1-related sequence 11)F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFOMC.G.S.X.
0.013e+034At5g37870833765seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination;C:nucleus, intracellular;MPOFC.G.S.X.
0.023e+034At5g40730834073AGP24Encodes an arabinogalactan-protein (AGP24).C.G.S.X.
0.013e+034At4g37770829933ACS8Encodes an auxin inducible ACC synthase.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.091e-965Glycine maxGmaAffx.66368.1.S1_atAW203726--2e-6At5g51080RNase H domain-containing proteinC.G.S.X.
0.022e+034Hordeum vulgareContig5887_atContig5887--7e-2At3g22360AOX1BC.G.S.X.
0.022e+036Oryza sativaOs08g02298009636.m01312--3e-3At2g42390protein kinase C substrate, heavy chain-relatedC.G.S.X.
0.087e-240Populus trichocarpaPtpAffx.16272.1.S1_atCV247844--4e-2At1g24090RNase H domain-containing proteinC.G.S.X.
0.023e+034Triticum aestivumTa.14999.1.S1_atCA686699--3e+0At4g18501unknown proteinC.G.S.X.
0.029e-134Vitis vinifera1621348_atCF405396--3e-1At2g36070ATTIM44-2C.G.S.X.
0.024e-446Zea maysZm.19287.1.S1_atCO534235hypothetical protein LOC100280134-6e-4At1g24090RNase H domain-containing proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage