CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23910

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g23910 839002 - F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.98 97.8 At4g02910 828141 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At5g17950 831662 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At4g16930 827401 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.94 96.7 At1g23610 838971 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At2g25990 817140 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.92 96.0 At1g33000 840195 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.92 96.0 At1g65170 842824 ubiquitin carboxyl-terminal hydrolase family protein F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMO S.X. H.G.
0.92 96.0 At2g37610 818338 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.91 95.6 At5g12450 831120 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
526.1 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
386.8 100.0 E-MEXP-509-raw-cel-829148561
278.1 100.0 E-MEXP-509-raw-cel-829148525
235.5 100.0 E-MEXP-509-raw-cel-829148201
234.1 100.0 E-MEXP-509-raw-cel-829148420
218.1 100.0 E-MEXP-509-raw-cel-829148456
209.8 100.0 E-MEXP-509-raw-cel-829148348
209.1 100.0 E-MEXP-509-raw-cel-829148597
194.5 100.0 E-MEXP-509-raw-cel-829148090
141.3 99.9 E-MEXP-509-raw-cel-829148632
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.67 1e-68 258 At1g24000 839012 Bet v I allergen family protein F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P C.G. S.X.
0.03 4e-1 34 At3g44320 823557 NIT3 (NITRILASE 3) This enzyme catalyzes the hydrolysis of indole-3-acetonitrile (IAN) to indole-3-acetic acid (IAA) (EC 3.5.5.1) and IAN to indole-3-acetamide (IAM) at lower levels. It is the only one of the four Arabidopsis nitrilases whose mRNA levels are strongly induced when plants experience sulphur deprivation. This enzyme likely participates in other non-auxin-related metabolic pathways. C.G. S.X.
0.02 4e-1 34 At1g19650 838552 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFO C.G. S.X.
0.01 2e+0 32 At5g55770 835671 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:cellular_component unknown;PMO C.G. S.X.
0.04 2e+0 32 At1g02880 839303 TPK1 (THIAMIN PYROPHOSPHOKINASE1) Encodes a thiamine pyrophosphokinase capable of producing thiamine pyrophosphate from free thiamine. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e+0 32 Glycine max GmaAffx.43840.1.S1_at BE023619 - - 8e-1 At4g29285 LCR24 (Low-molecular-weight cysteine-rich 24) C.G. S.X.
0.05 3e+0 30 Hordeum vulgare Contig7909_at Contig7909 - - 3e+0 At4g33750 - C.G. S.X.
0.04 8e-1 34 Oryza sativa Os07g0241900 NM_186800.1 - - 1e+0 At1g23910 - C.G. S.X.
0.06 2e+0 32 Populus trichocarpa PtpAffx.204436.1.S1_at pmrna8713 hypothetical protein - 7e-1 At1g24000 Bet v I allergen family protein C.G. S.X.
0.06 4e-1 34 Triticum aestivum TaAffx.53897.1.S1_at CA687979 - - 7e-1 At1g23910 - C.G. S.X.
0.05 8e+0 28 Vitis vinifera 1622299_s_at CK136935.1 hypothetical protein LOC100255647 - 7e-10 At5g54190 PORA C.G. S.X.
0.04 3e+0 30 Zea mays Zm.9251.2.A1_a_at BM268759 hypothetical protein LOC100194001 - 4e+0 At3g25250 AGC2-1 (OXIDATIVE SIGNAL-INDUCIBLE1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006952 Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
L GO:0009607 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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