CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23710

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At1g23710 838981 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.89 94.6 At4g17500 827464 ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.82 90.9 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. S.X. H.G.
0.78 88.6 At1g80840 844423 WRKY40 Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. S.X. H.G.
0.75 86.9 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.71 84.2 At2g30040 817555 MAPKKK14 member of MEKK subfamily S.X. H.G.
0.67 81.6 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.59 74.7 At1g76600 843993 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:nucleolus, nucleus;P S.X. H.G.
0.57 73.8 At1g27730 839666 STZ (salt tolerance zinc finger) Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. Also involved in response to photooxidative stress. S.X. H.G.
0.48 62.5 At2g41640 818762 transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:unknown;PMOBF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
214.0 100.0 E-MEXP-807-raw-cel-1173273088
171.6 100.0 E-MEXP-807-raw-cel-1173273252
166.0 100.0 GSM13779 Dexamethasone plus cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
160.7 99.9 E-MEXP-807-raw-cel-1173273060
157.1 99.9 E-MEXP-807-raw-cel-1173273170
148.0 99.9 E-MEXP-807-raw-cel-1173273116
137.8 99.9 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
131.8 99.9 E-MEXP-807-raw-cel-1173273196
125.4 99.9 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
119.2 99.9 E-MEXP-807-raw-cel-1173273144
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 1e-29 131 At1g70420 843378 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.06 1e-4 48 At3g09032 2745876 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 7e-3 42 At4g27460 828855 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.01 3e-2 40 At5g13030 831143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBMFPA C.G. S.X.
0.03 3e-2 40 At5g47220 834768 ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-2). The protein contains one AP2 domain. Functions as activator of GCC box�dependent transcription. Positive regulator of JA-responsive defense genes and resistance to F. oxysporum and enhances JA inhibition of root elongation. C.G. S.X.
0.01 3e-2 40 At4g30350 829158 heat shock protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFAM C.G. S.X.
0.04 3e-2 40 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF C.G. S.X.
0.02 3e-2 40 At3g58830 825052 haloacid dehalogenase (HAD) superfamily protein F:catalytic activity;P:unknown;C:chloroplast;BOFP C.G. S.X.
0.01 3e-2 40 At3g58440 825013 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-2 40 Glycine max PsAffx.C3000031_at PsAffx.C3000031 - - 4e-1 At1g11700 unknown protein C.G. S.X.
0.04 2e-1 36 Hordeum vulgare Contig16984_at Contig16984 - - 6e+0 At4g34050 caffeoyl-CoA 3-O-methyltransferase, putative C.G. S.X.
0.07 2e-4 48 Oryza sativa OsAffx.7492.1.S1_at - - - 0 C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.200010.1.S1_at pmrna13 hypothetical protein - 3e-2 At1g55535 unknown protein C.G. S.X.
0.03 7e-3 42 Triticum aestivum Ta.4108.2.A1_at BJ264503 - - 4e+0 At3g63040 unknown protein C.G. S.X.
0.04 1e-1 36 Vitis vinifera 1610232_at CA809614 hypothetical protein LOC100261227 - 2e-8 At2g19690 PLA2-BETA (PHOSPHOLIPASE A2-BETA) C.G. S.X.
0.03 1e-2 40 Zea mays Zm.258.1.S1_at X67323.1 - - 2e-3 At3g09032 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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