Gene omics information

Query gene ID At1g23550
Gene name SRO2 (SIMILAR TO RCD ONE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g23550838965SRO2 (SIMILAR TO RCD ONE 2)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.S.X.H.G.
0.3338.1At2g02860814817SUT2 (SUCROSE TRANSPORTER 2)encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.S.X.H.G.
0.2014.4At5g51740835248peptidase M48 family proteinF:metalloendopeptidase activity;P:proteolysis;C:membrane;BOFMPAS.X.H.G.
0.1811.4At2g02730814802-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.146.8At4g02195827505SYP42 (SYNTAXIN OF PLANTS 42)member of SYP4 Gene FamilyS.X.H.G.
0.092.8At5g54640835553RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)Isolated from T-DNA insertion line, the rat5 mutant is deficient in T-DNA integration. Encodes histone2A protein.S.X.H.G.
0.030.6At5g20910832215zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:nucleus;PMOFVS.X.H.G.
0.030.6At3g10800820249BZIP28Encodes bZIP28, a putative membrane-tethered transcriptional factor. Up-regulated in response to heat; a bZIP28 null mutant has a heat-sensitive phenotype. bZIP28 has a similar domain structure to the mammalian ATF6 protein involved in the unfolded protein response (UPR), and shares a bZIP domain, transmembrane domain, and a canonical S1P cleavage site. The bZIP28 seems to be glycosylated in vivo. bZIP28 does not appear to be transcriptionally up-regulated by UPR-inducing tunicamycin (TM) treatment. But, the expression level of three UPR-related genes is reduced in TM-treated zip28 mutants relative to wild type seedlings. And several UPR genes are transcriptionally upregulated when an N-terminal portion of the bZIP28 protein is expressed using the 35S promoter. A myc:bZIP28 fusion protein appears to be cleaved, likely at a canonical S2 cleavage site, following a TM treatment or a DTT stress-inducing treatment, but not a salt treatment. A portion of the mGFP:bZIP28 protein present in root cells appears to translocate from the cytoplasm and ER to the nucleus following TM treatment.S.X.H.G.
0.030.6At4g02880828150unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
0.010.2At1g51710841596UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
133.699.9GSM205185protoplast_KIN10_rep2GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
133.699.9E-MEXP-1443-raw-cel-1581869803
118.099.9E-MEXP-1443-raw-cel-1581869745
89.499.9GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
86.699.9GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
78.599.9GSM134208Murray_3-4_D7-GROWTH_Rep1_ATH1GSE5750Growth of suspension-cultured cells
78.199.9GSM205159protoplast_KIN10_rep1GSE8257Identification of KIN10-target genes in Arabidopsis mesophyll cells
78.099.9GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
76.699.9GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
75.899.9GSM184922Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.189e-1891At1g70440843380SRO3 (SIMILAR TO RCD ONE 3)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.C.G.S.X.
0.032e-654At5g62520836372SRO5 (SIMILAR TO RCD ONE 5)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. Up-regulated by NaCl. SRO5 and P5CDH (an overlapping gene in the antisense orientation) generate 24-nt and 21-nt siRNAs, which together are components of a regulatory loop controlling reactive oxygen species (ROS) production and stress response.C.G.S.X.
0.045e-446At3g47720823926SRO4 (SIMILAR TO RCD ONE 4)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.C.G.S.X.
0.021e-138At5g45980834638WOX8 (WUSCHEL RELATED HOMEOBOX 8)Arabidopsis thaliana WOX8 protein. Contains similarity to homeodomain transcription factor. Positively regulates early embryonic growth.C.G.S.X.
0.031e-138At3g14670820695unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.031e-138At3g12370820415ribosomal protein L10 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPC.G.S.X.
0.015e-136At5g67530836889peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinF:ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity;P:protein folding, protein ubiquitination;C:ubiquitin ligase complex;OBMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxHgAffx.23445.1.S1_atBF014404--1e+0At4g10680transcription factor IIB (TFIIB) family proteinC.G.S.X.
0.024e+032Hordeum vulgareContig14425_atContig14425--2e+0At5g45710RHA1 (ROOT HANDEDNESS 1)C.G.S.X.
0.034e+034Oryza sativaOsAffx.5829.1.S1_at---0C.G.S.X.
0.073e-344Populus trichocarpaPtpAffx.210568.1.S1_atpmrna20731hypothetical protein-3e-17At3g47720SRO4 (SIMILAR TO RCD ONE 4)C.G.S.X.
0.035e-136Triticum aestivumTaAffx.31446.1.S1_atCA616225--1e-1At2g23430ICK1C.G.S.X.
0.022e+032Vitis vinifera1616054_atCF515616--9e-1At1g29962AGL64 (AGAMOUS-LIKE 64)C.G.S.X.
0.033e+032Zea maysZmAffx.929.1.S1_atAI795460--5e-2At5g17900-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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