CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23540

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At1g23540 838963 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOBFPVA S.X. H.G.
0.76 87.4 At4g00350 827306 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA S.X. H.G.
0.73 85.5 At4g28000 828913 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV S.X. H.G.
0.65 79.6 At2g48150 819427 ATGPX4 (GLUTATHIONE PEROXIDASE 4) Encodes glutathione peroxidase. S.X. H.G.
0.61 76.7 At1g24620 839076 polcalcin, putative / calcium-binding pollen allergen, putative F:calcium ion binding;P:response to cold;C:nucleus;MFPOBV S.X. H.G.
0.56 73.0 At1g67290 843049 glyoxal oxidase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOM S.X. H.G.
0.56 73.0 At3g46520 823805 ACT12 (ACTIN-12) Member of actin subclass composed of ACT12 and ACT4. RNA is expressed at very low levels in vegetative organs, low levels in flowers and very high levels in pollen. Expression of an ACT12/GUS fusion was found in vascular tissues, tapetum, developing and mature pollen, the root cap and in a ring of pericycle tissues during lateral root initiation and early development. S.X. H.G.
0.46 59.8 At5g27980 832868 seed maturation family protein F:molecular_function unknown;P:multicellular organismal development;C:cellular_component unknown;PBMO S.X. H.G.
0.44 57.2 At4g27110 828819 COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.44 57.2 At5g07420 830633 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
336.9 100.0 E-MEXP-1138-raw-cel-1432773322
325.5 100.0 E-MEXP-1138-raw-cel-1432773258
298.9 100.0 E-MEXP-1138-raw-cel-1432773290
250.0 100.0 E-MEXP-1138-raw-cel-1432773034
206.8 100.0 E-MEXP-1138-raw-cel-1432773066
198.5 100.0 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
174.2 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
153.5 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
129.9 99.9 E-MEXP-1138-raw-cel-1432773354
107.5 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.48 0 658 At1g70460 843382 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVA C.G. S.X.
0.48 1e-151 537 At1g70450 843381 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 8e-14 79 At1g26150 839156 PERK10 (PROLINE-RICH EXTENSIN-LIKE RECEPTOR KINASE 10) F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MBOFPVA C.G. S.X.
0.09 2e-11 71 At1g10620 837605 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOPBFVA C.G. S.X.
0.06 5e-9 63 At1g49270 841351 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MOBPFVA C.G. S.X.
0.06 7e-8 59 At1g52290 841659 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA C.G. S.X.
0.07 1e-6 56 At4g34440 829595 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA C.G. S.X.
0.07 5e-6 54 At5g38560 833844 protein kinase family protein F:structural constituent of cell wall, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MBOFPVA C.G. S.X.
0.02 7e-5 50 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-1 40 Glycine max GmaAffx.81507.1.S1_at AI507885 - - 6e-3 At3g21630 CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1) C.G. S.X.
0.08 6e-10 65 Hordeum vulgare Contig13746_at Contig13746 - - 8e-10 At1g23540 protein kinase family protein C.G. S.X.
0.07 1e-4 50 Oryza sativa Os05g0218400 CB680782 - Protein kinase domain containing protein 4e-18 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.20 5e-16 87 Populus trichocarpa PtpAffx.224637.1.S1_at pmrna43372 hypothetical protein - 7e-37 At1g70450 protein kinase family protein C.G. S.X.
0.09 1e-12 75 Triticum aestivum TaAffx.46608.1.S1_at CA638525 - - 3e-8 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
0.02 1e-3 44 Vitis vinifera 1612735_at CB976938 hypothetical protein LOC100267773 - 3e-2 At3g24540 protein kinase family protein C.G. S.X.
0.03 5e-4 46 Zea mays Zm.14465.1.S1_at AY108241.1 hypothetical protein LOC100279274 - 5e-15 At3g24550 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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