Gene omics information

Query gene ID At1g23420
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6176.7At1g23420838950INO (INNER NO OUTER)Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.S.X.H.G.
0.6075.7At2g21450816684CHR34 (chromatin remodeling 34)F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MFBOPVAS.X.H.G.
0.3338.1At1g05540837056unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.2726.2At3g21310821685unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.1912.7At4g14730827126transmembrane protein-relatedF:glutamate binding;P:unknown;C:unknown;BOMPFVS.X.H.G.
0.061.4At5g62230836344ERL1 (ERECTA-LIKE 1)Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
765.6100.0GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
57.299.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-344At5g40720834072-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFMC.G.S.X.
0.012e-240At4g29790829101unknown proteinF:molecular_function unknown;P:unknown;C:unknown;OMPFBVC.G.S.X.
0.072e-240At1g084653766682YAB2 (YABBY2)Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organsC.G.S.X.
0.023e-136At4g24760828578unknown proteinF:unknown;P:unknown;C:unknown;OBMPFVAC.G.S.X.
0.023e-136At4g35850829739pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:unknown;C:mitochondrion;POMFBAC.G.S.X.
0.013e-136At3g52100824373PHD finger family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBC.G.S.X.
0.033e-136At3g56800824847CAM3 (CALMODULIN 3)encodes a calmodulinC.G.S.X.
0.033e-136At3g04060819561anac046 (Arabidopsis NAC domain containing protein 46)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.102e-344Glycine maxGma.12239.1.A1_atCD416578--1e-48At2g45190AFO (ABNORMAL FLORAL ORGANS)C.G.S.X.
0.033e+032Hordeum vulgareContig7308_s_atContig7308--4e+0At3g15909unknown proteinC.G.S.X.
0.044e-240Oryza sativaOs03g0650000AK070258.1-YABBY protein family protein7e-10At2g26580YAB5 (YABBY5)C.G.S.X.
0.405e-1375Populus trichocarpaPtpAffx.208299.1.S1_atpmrna16506hypothetical protein-3e-13At1g23420INO (INNER NO OUTER)C.G.S.X.
0.039e-238Triticum aestivumTa.28540.3.S1_a_atCA654726--1e+0At5g02570histone H2B, putativeC.G.S.X.
0.067e-650Vitis vinifera1614298_atCF403239hypothetical protein LOC100256505-7e-40At1g08465YAB2 (YABBY2)C.G.S.X.
0.064e-238Zea maysZm.7769.1.S1_atAY105367.1protein YABBY-2e-12At4g00180YAB3 (YABBY3)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009944The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
XGO:0048481The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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