CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23420

Gene name INO (INNER NO OUTER)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At1g23420 838950 INO (INNER NO OUTER) Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. S.X. H.G.
0.60 75.7 At2g21450 816684 CHR34 (chromatin remodeling 34) F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MFBOPVA S.X. H.G.
0.33 38.1 At1g05540 837056 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.27 26.2 At3g21310 821685 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.19 12.7 At4g14730 827126 transmembrane protein-related F:glutamate binding;P:unknown;C:unknown;BOMPFV S.X. H.G.
0.06 1.4 At5g62230 836344 ERL1 (ERECTA-LIKE 1) Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
765.6 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
88.1 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
68.5 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.9 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.5 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
59.2 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
58.8 99.8 E-MEXP-1246-raw-cel-1504120291
57.2 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
56.4 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
53.3 99.8 E-MEXP-1246-raw-cel-1504120171
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 1e-3 44 At5g40720 834072 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOFM C.G. S.X.
0.01 2e-2 40 At4g29790 829101 unknown protein F:molecular_function unknown;P:unknown;C:unknown;OMPFBV C.G. S.X.
0.07 2e-2 40 At1g08465 3766682 YAB2 (YABBY2) Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs C.G. S.X.
0.02 3e-1 36 At4g24760 828578 unknown protein F:unknown;P:unknown;C:unknown;OBMPFVA C.G. S.X.
0.02 3e-1 36 At4g35850 829739 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:unknown;C:mitochondrion;POMFBA C.G. S.X.
0.01 3e-1 36 At3g52100 824373 PHD finger family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFB C.G. S.X.
0.03 3e-1 36 At3g56800 824847 CAM3 (CALMODULIN 3) encodes a calmodulin C.G. S.X.
0.03 3e-1 36 At3g04060 819561 anac046 (Arabidopsis NAC domain containing protein 46) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-3 44 Glycine max Gma.12239.1.A1_at CD416578 - - 1e-48 At2g45190 AFO (ABNORMAL FLORAL ORGANS) C.G. S.X.
0.03 3e+0 32 Hordeum vulgare Contig7308_s_at Contig7308 - - 4e+0 At3g15909 unknown protein C.G. S.X.
0.04 4e-2 40 Oryza sativa Os03g0650000 AK070258.1 - YABBY protein family protein 7e-10 At2g26580 YAB5 (YABBY5) C.G. S.X.
0.40 5e-13 75 Populus trichocarpa PtpAffx.208299.1.S1_at pmrna16506 hypothetical protein - 3e-13 At1g23420 INO (INNER NO OUTER) C.G. S.X.
0.03 9e-2 38 Triticum aestivum Ta.28540.3.S1_a_at CA654726 - - 1e+0 At5g02570 histone H2B, putative C.G. S.X.
0.06 7e-6 50 Vitis vinifera 1614298_at CF403239 hypothetical protein LOC100256505 - 7e-40 At1g08465 YAB2 (YABBY2) C.G. S.X.
0.06 4e-2 38 Zea mays Zm.7769.1.S1_at AY105367.1 protein YABBY - 2e-12 At4g00180 YAB3 (YABBY3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009944 The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
X GO:0048481 The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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