CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23250

Gene name calcium ion binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g23250 838934 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.98 97.8 At1g23590 838969 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.95 97.0 At1g23520 838960 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.93 96.4 At1g23670 838977 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.88 94.0 At1g30350 839915 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.87 93.5 At1g06250 837135 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;POFBMV S.X. H.G.
0.86 93.1 At3g52810 824447 PAP21 (PURPLE ACID PHOSPHATASE 21) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBMOFA S.X. H.G.
0.85 92.4 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO S.X. H.G.
0.85 92.4 At5g07540 830647 GRP16 (GLYCINE-RICH PROTEIN 16) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12). S.X. H.G.
0.84 91.9 At5g07520 830645 GRP18 (GLYCINE-RICH PROTEIN 18) encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stage 12). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
281.7 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
256.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
219.0 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
177.7 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
166.1 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
143.5 99.9 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
133.8 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
133.2 99.9 GSM106919 opr3_OPDA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
133.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
131.6 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 1e-92 339 At1g23240 838933 caleosin-related family protein F:lipase activity, calcium ion binding;P:unknown;C:extracellular region;PFO C.G. S.X.
0.10 4e-3 42 At1g70680 843405 caleosin-related family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.01 2e-2 40 At2g22400 816771 NOL1/NOP2/sun family protein F:unknown;P:unknown;C:cellular_component unknown;BOMFAP C.G. S.X.
0.01 7e-2 38 At4g16310 827325 LDL3 (LSD1-LIKE3) F:electron carrier activity, amine oxidase activity, oxidoreductase activity;P:unknown;C:unknown;MBFOPA C.G. S.X.
0.01 3e-1 36 At5g42340 834240 binding / ubiquitin-protein ligase F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;MPOFBV C.G. S.X.
0.02 3e-1 36 At2g37500 818326 arginine biosynthesis protein ArgJ family F:glutamate N-acetyltransferase activity;P:arginine biosynthetic process;C:chloroplast;OBFAP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 34 Glycine max Gma.662.1.S1_at CD409953 - - 1e-1 At1g70680 caleosin-related family protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare S0000700009B06F2_at S0000700009B06F2 - - 3e+0 Atcg00530 - C.G. S.X.
0.02 8e+0 32 Oryza sativa Os02g0253700 AK072542.1 - Conserved hypothetical protein 2e+0 At3g57950 unknown protein C.G. S.X.
0.06 1e+0 34 Populus trichocarpa Ptp.7473.1.S1_at DN486136 hypothetical protein - 8e-12 At1g70670 caleosin-related family protein C.G. S.X.
0.05 3e-1 36 Triticum aestivum Ta.9830.1.A1_a_at BJ237316 - - 5e-1 At4g26740 ATS1 (ARABIDOPSIS THALIANA SEED GENE 1) C.G. S.X.
0.04 3e-1 34 Vitis vinifera 1613760_at CF204137.1 - - 1e+0 At5g41030 TCP family transcription factor, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13608.1.S1_at AY107589.1 - - 2e-5 At3g53420 PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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