CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23200

Gene name pectinesterase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM S.X. H.G.
0.73 85.5 At2g23550 816887 MES6 (METHYL ESTERASE 6) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. S.X. H.G.
0.67 81.6 At1g20500 838638 4-coumarate-CoA ligase F:4-coumarate-CoA ligase activity;P:phenylpropanoid metabolic process, metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.67 81.6 At2g23580 816890 MES4 (METHYL ESTERASE 4) Encodes a protein shown to have carboxylesterase activity and methyl salicylate esterase activity in vitro. This protein does not act on methyl IAA, methyl JA, MeGA4, or MEGA9 in vitro. S.X. H.G.
0.67 81.6 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
479.4 100.0 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
421.1 100.0 GSM131690 ATGE_77_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
346.3 100.0 GSM131693 ATGE_78_F GSE5634 AtGenExpress: Developmental series (siliques and seeds)
332.6 100.0 GSM131692 ATGE_78_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
332.2 100.0 GSM131689 ATGE_77_E GSE5634 AtGenExpress: Developmental series (siliques and seeds)
291.7 100.0 GSM131688 ATGE_77_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
281.4 100.0 E-MEXP-1443-raw-cel-1581869573
256.6 100.0 GSM131691 ATGE_78_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
148.8 99.9 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
140.6 99.9 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 6e-11 69 At4g00190 828218 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.03 9e-7 56 At1g53830 841820 ATPME2 encodes a pectin methylesterase C.G. S.X.
0.03 3e-6 54 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 1e-5 52 At3g06830 819867 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOAM C.G. S.X.
0.04 3e-3 44 At3g14310 820651 ATPME3 encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism. C.G. S.X.
0.02 1e-2 42 At5g18990 832017 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.03 1e-2 42 At5g51500 835224 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.01 1e-2 42 At3g59010 825070 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO C.G. S.X.
0.02 5e-2 40 At5g04970 830379 pectinesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-3 44 Glycine max GmaAffx.26348.1.S1_at BE474551 - - 7e-3 At2g43050 ATPMEPCRD C.G. S.X.
0.02 4e-1 36 Hordeum vulgare Contig22325_at Contig22325 - - 1e+0 At5g15290 integral membrane family protein C.G. S.X.
0.02 2e-6 56 Oryza sativa Os07g0691100 AK071728.1 - Pectinesterase (EC 3.1.1.11) (Fragment) 1e-6 At1g23200 pectinesterase family protein C.G. S.X.
0.04 3e-4 48 Populus trichocarpa PtpAffx.214087.1.S1_at pmrna27425 hypothetical protein - 3e-10 At4g33230 pectinesterase family protein C.G. S.X.
0.03 9e-1 36 Triticum aestivum Ta.1564.1.S1_at CD878081 - - 1e-1 At1g11580 PMEPCRA (METHYLESTERASE PCR A) C.G. S.X.
0.04 3e-4 46 Vitis vinifera 1610996_at BQ794786 pectinesterase - 2e-9 At1g53840 ATPME1 C.G. S.X.
0.02 6e+0 32 Zea mays Zm.6015.1.A1_at AI666198 - - 1e+0 At5g24570 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0042545 The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00400 Homogalacturonan degradation
00422 Carbohydrate esterases
00442 Rhamnogalacturonan II degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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