Gene omics information

Query gene ID At1g23160
Gene name auxin-responsive GH3 family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At1g23160838924auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:unknown;OPBMFS.X.H.G.
0.9396.4At1g26680839209transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBMS.X.H.G.
0.9195.6At4g34970829649ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)F:actin binding;P:biological_process unknown;C:intracellular;MPOFS.X.H.G.
0.8793.5At3g55550824720lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.8693.1At3g01840820047protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVAS.X.H.G.
0.8592.4At5g02070831776protein kinase-relatedF:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVAS.X.H.G.
0.8592.4At1g04180837024flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMPAS.X.H.G.
0.8491.9At1g21340838733Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POS.X.H.G.
0.8391.4At1g48070841225-F:molecular_function unknown;P:cell redox homeostasis;C:cellular_component unknown;BPOS.X.H.G.
0.8290.9At1g04610839474flavin-containing monooxygenase / FMO (YUCCA3)F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
541.9100.0GSM266667Arabidopsis, root cells, columella root cap, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
438.9100.0GSM184894Arabidopsis, root cells, columella root cap, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
426.4100.0GSM184893Arabidopsis, root cells, columella root cap, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
332.5100.0GSM266668Arabidopsis, root cells, columella root cap, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
312.4100.0GSM266666Arabidopsis, root cells, columella root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
294.3100.0GSM226531L1SBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
222.3100.0GSM184892Arabidopsis, root cells, columella root cap, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
190.5100.0GSM266662Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
187.3100.0GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
166.4100.0GSM266665Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.612e-158559At5g13320831173PBS3 (AVRPPHB SUSCEPTIBLE 3)Encodes PBS3 (avrPphB susceptible), also known as GDG1 (GH3-Like Defense Gene 1), WIN3 (HopW1-1-Interacting 3). Involved in disease-resistance signaling pathway. Required for accumulation of salicylic acid, activation of defense responses and resistance to Pseudomonas syringae. Expression detected in cotyledons, true leaves, hypocotyls and occasionally in some parts of roots from 10-day-old seedlings. No expression was detected in root, stem, rosette or cauline leaves of mature 4- to 5-week-old plants.C.G.S.X.
0.171e-24115At1g48670841289auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMFC.G.S.X.
0.131e-1585At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFC.G.S.X.
0.152e-1171At5g51470835221auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMFC.G.S.X.
0.042e-861At5g13360831177auxin-responsive GH3 family proteinF:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMFC.G.S.X.
0.022e-448At5g54510835539DFL1 (DWARF IN LIGHT 1)Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).C.G.S.X.
0.039e-446At2g14960815985GH3.1encodes a protein similar to IAA-amido synthases. Lines carrying an insertion in this gene are hypersensitive to auxin.C.G.S.X.
0.099e-446At1g48690841291auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e-242Glycine maxGma.3571.1.S1_atBE658493--1e-1At2g47750GH3.9 (PUTATIVE INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.9)C.G.S.X.
0.022e+034Hordeum vulgareEBpi01_SQ001_I04_s_atEBpi01_SQ001_I04--1e-5At3g25530GLYR1 (GLYOXYLATE REDUCTASE 1)C.G.S.X.
0.041e-140Oryza sativaOs06g0499500AK099376.1-GH3 auxin-responsive promoter family protein5e-3At5g54510DFL1 (DWARF IN LIGHT 1)C.G.S.X.
0.021e+036Populus trichocarpaPtpAffx.140928.1.A1_atCV239658GH3 family protein /// GH3 family protein-6e-6At1g28130GH3.17C.G.S.X.
0.024e+034Triticum aestivumTaAffx.36762.2.S1_s_atBJ315636--3e+0At5g13180ANAC083 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 83)C.G.S.X.
0.011e+034Vitis vinifera1610366_atCB976250hypothetical protein LOC100261806-8e-5At4g22200AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)C.G.S.X.
0.022e+130Zea maysZmAffx.1053.1.A1_atAI881846--3e+0At1g16240SYP51 (SYNTAXIN OF PLANTS 51)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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