CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g23020

Gene name FRO3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At1g23020 838910 FRO3 Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. S.X. H.G.
0.86 93.1 At3g56980 824865 BHLH039 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMF S.X. H.G.
0.67 81.6 At5g04150 830293 BHLH101 F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBF S.X. H.G.
0.38 46.7 At5g05250 830407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.09 2.8 At1g74760 - - - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
174.6 100.0 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
113.9 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
106.4 99.9 GSM265471 Arabidopsis, whole roots, -Fe, 48 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
92.9 99.9 GSM265472 Arabidopsis, whole roots, -Fe, 48 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
90.4 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
90.2 99.9 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
77.1 99.9 GSM125257 Seedling_OETOP6B_rep2 GSE5465 Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
72.6 99.9 GSM125256 Seedling_OETOP6B_rep1 GSE5465 Gene expression in wild-type and transgenic plants overexpressing rice topoisomerase6 genes
70.1 99.9 GSM265469 Arabidopsis, whole roots, -Fe, 24 hour, rep 1 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
66.3 99.8 GSM265470 Arabidopsis, whole roots, -Fe, 24 hour, rep 2 GSE10502 Time course expression analysis of the iron deficiency (-Fe) response in Arabidopsis roots
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 0 1088 At1g01590 837194 FRO1 (FERRIC REDUCTION OXIDASE 1) Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings. C.G. S.X.
0.34 2e-66 254 At1g01580 839411 FRO2 (FERRIC REDUCTION OXIDASE 2) Encodes the low-iron-inducible ferric chelate reductase responsible for reduction of iron at the root surface. It is likely to be the major Fe(III) chelate reductase in Arabidopsis iron metabolism. Coordinately regulated with IRT1, the major transporter responsible for high-affinity iron uptake from the soil, at both transcriptional and posttranscriptional levels. Steady state mRNA levels are regulated by several metals. Its transcription is regulated by FIT1. C.G. S.X.
0.06 7e-11 69 At5g23980 832463 FRO4 (FERRIC REDUCTION OXIDASE 4) Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and cotyledons, but not flowers. Its transcription is regulated by FIT1. C.G. S.X.
0.07 1e-9 65 At5g23990 832464 FRO5 (FERRIC REDUCTION OXIDASE 5) Encodes a ferric chelate reductase that is expressed at low levels in roots,shoots and flowers, but not cotyledons. C.G. S.X.
0.02 2e-2 42 At1g09575 837484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MPFO C.G. S.X.
0.01 3e-1 38 At5g18120 831930 ATAPRL7 (APR-like 7) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. C.G. S.X.
0.01 1e+0 36 At1g12064 3766707 unknown protein F:unknown;P:unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 36 At1g02580 839422 MEA (MEDEA) Encodes a putative transcription factor MEDEA (MEA) that negatively regulates seed development in the absence of fertilization. Mutations in this locus result in embryo lethality. MEA is a Polycomb group gene that is imprinted in the endosperm. The maternal allele is expressed and the paternal allele is silent. MEA is controlled by DEMETER (DME), a DNA glycosylase required to activate MEA expression, and METHYLTRANSFERASE I (MET1), which maintains CG methylation at the MEA locus. MEA is involved in the negative regulation of its own imprinted gene expression; the effect is not only allele-specific but also dynamically regulated during seed development. In the ovule, the MEA transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization C.G. S.X.
0.01 4e+0 34 At5g59220 836040 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:response to water deprivation, response to abscisic acid stimulus;C:chloroplast;MPOFBV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Glycine max GmaAffx.54104.1.S1_at BF069245 - - 2e-1 At4g15510 photosystem II reaction center PsbP family protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig12780_at Contig12780 - - 5e-1 At2g16575 unknown protein C.G. S.X.
0.01 2e+0 36 Oryza sativa Os02g0744600 AK058756.1 - Hypothetical protein 9e-4 At4g13410 ATCSLA15 C.G. S.X.
0.06 4e-7 57 Populus trichocarpa PtpAffx.221575.1.S1_at pmrna38527 hypothetical protein - 2e-11 At5g23990 FRO5 (FERRIC REDUCTION OXIDASE 5) C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.79641.1.S1_at CA711515 - - 2e-1 At1g24270 unknown protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1616580_at CF206767.1 hypothetical protein LOC100260322 - 2e+0 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) C.G. S.X.
0.01 1e-1 38 Zea mays Zm.1125.2.S1_at CF036557 - - 4e+0 At5g51860 MADS-box protein (AGL72) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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