CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22990

Gene name heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At1g22990 838907 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFM S.X. H.G.
0.58 73.8 At1g05450 837046 protease inhibitor/seed storage/lipid transfer protein (LTP)-related Encodes a Protease inhibitor/seed storage/LTP family protein S.X. H.G.
0.51 66.3 At1g12010 837753 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative encodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidase S.X. H.G.
0.43 55.3 At1g09380 837460 integral membrane family protein / nodulin MtN21-related F:unknown;P:unknown;C:endomembrane system, membrane;BOPAMF S.X. H.G.
0.41 52.4 At5g13170 831156 SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29) F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOB S.X. H.G.
0.39 48.4 At2g05910 815143 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.38 46.7 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.37 45.0 At1g68380 843167 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.36 43.6 At5g50770 835149 AtHSD6 (hydroxysteroid dehydrogenase 6) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.34 39.8 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
908.2 100.0 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
398.3 100.0 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
365.9 100.0 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
162.0 99.9 GSM10481 lec1-1 Mature Green Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
157.7 99.9 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
146.0 99.9 GSM268249 dor-drought-2, biological rep 2 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
135.9 99.9 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
120.0 99.9 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
112.8 99.9 GSM10482 lec1-1 Mature Green Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
94.4 99.9 GSM269829 WT leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.38 3e-28 125 At1g71050 843445 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBM C.G. S.X.
0.10 4e-3 42 At4g08570 826418 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOM C.G. S.X.
0.03 1e-2 40 At5g24580 832529 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVA C.G. S.X.
0.02 9e-1 34 At4g13330 826963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO C.G. S.X.
0.04 9e-1 34 At4g38580 830015 ATFP6 (FARNESYLATED PROTEIN 6) putative farnesylated protein (At4g38580) mRNA, complete C.G. S.X.
0.01 9e-1 34 At4g19210 827661 ATRLI2 member of RLI subfamily C.G. S.X.
0.03 9e-1 34 At3g12220 820402 scpl16 (serine carboxypeptidase-like 16) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.02 9e-1 34 At1g70200 843356 RNA recognition motif (RRM)-containing protein F:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 3e-1 36 Glycine max Gma.7547.1.S1_at CA935581 - - 3e-1 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.07 3e-2 38 Hordeum vulgare Contig6074_at Contig6074 - - 5e-4 At1g71050 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.05 3e-2 40 Oryza sativa Os06g0542300 9634.m03314 - Heavy metal transport/detoxification proteindomain containing protein 3e-2 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.14 2e-2 40 Populus trichocarpa PtpAffx.202593.1.S1_s_at pmrna5192 hypothetical protein - 2e-2 At1g22990 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related C.G. S.X.
0.07 1e-3 44 Triticum aestivum Ta.19774.1.S1_at BE216927 - - 1e-1 At4g38580 ATFP6 (FARNESYLATED PROTEIN 6) C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1618746_at CF516441 - - 4e+0 At5g57760 unknown protein C.G. S.X.
0.10 4e-4 44 Zea mays Zm.10204.1.A1_at CF634444 farnesylated protein 2 - 1e-7 At4g38580 ATFP6 (FARNESYLATED PROTEIN 6) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0030001 The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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