Gene omics information

Query gene ID At1g22990
Gene name heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At1g22990838907heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFMS.X.H.G.
0.5873.8At1g05450837046protease inhibitor/seed storage/lipid transfer protein (LTP)-relatedEncodes a Protease inhibitor/seed storage/LTP family proteinS.X.H.G.
0.5166.3At1g120108377531-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putativeencodes a protein whose sequence is similar to 1-amino-cyclopropane-1-carboxylic acid oxidaseS.X.H.G.
0.4355.3At1g09380837460integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:endomembrane system, membrane;BOPAMFS.X.H.G.
0.4152.4At5g13170831156SAG29 (SENESCENCE-ASSOCIATED PROTEIN 29)F:unknown;P:unknown;C:endomembrane system, integral to membrane, membrane;PMOBS.X.H.G.
0.3948.4At2g05910815143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
0.3846.7At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFS.X.H.G.
0.3745.0At1g68380843167unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POS.X.H.G.
0.3643.6At5g50770835149AtHSD6 (hydroxysteroid dehydrogenase 6)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVS.X.H.G.
0.3439.8At5g49190834978SUS2 (SUCROSE SYNTHASE 2)Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
908.2100.0GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
398.3100.0GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
365.9100.0GSM269827C2 leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
162.099.9GSM10481lec1-1 Mature Green Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
157.799.9GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
146.099.9GSM268249dor-drought-2, biological rep 2GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
135.999.9GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
120.099.9GSM10451WT Mature Green Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
112.899.9GSM10482lec1-1 Mature Green Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
94.499.9GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.383e-28125At1g71050843445heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PFBMC.G.S.X.
0.104e-342At4g08570826418heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:cellular_component unknown;PBOMC.G.S.X.
0.031e-240At5g24580832529copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;MOPBFVAC.G.S.X.
0.029e-134At4g13330826963unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOC.G.S.X.
0.049e-134At4g38580830015ATFP6 (FARNESYLATED PROTEIN 6)putative farnesylated protein (At4g38580) mRNA, completeC.G.S.X.
0.019e-134At4g19210827661ATRLI2member of RLI subfamilyC.G.S.X.
0.039e-134At3g12220820402scpl16 (serine carboxypeptidase-like 16)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOC.G.S.X.
0.029e-134At1g70200843356RNA recognition motif (RRM)-containing proteinF:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-136Glycine maxGma.7547.1.S1_atCA935581--3e-1At1g22990heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.073e-238Hordeum vulgareContig6074_atContig6074--5e-4At1g71050heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.053e-240Oryza sativaOs06g05423009634.m03314-Heavy metal transport/detoxification proteindomain containing protein3e-2At1g22990heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.142e-240Populus trichocarpaPtpAffx.202593.1.S1_s_atpmrna5192hypothetical protein-2e-2At1g22990heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.071e-344Triticum aestivumTa.19774.1.S1_atBE216927--1e-1At4g38580ATFP6 (FARNESYLATED PROTEIN 6)C.G.S.X.
0.034e+030Vitis vinifera1618746_atCF516441--4e+0At5g57760unknown proteinC.G.S.X.
0.104e-444Zea maysZm.10204.1.A1_atCF634444farnesylated protein 2-1e-7At4g38580ATFP6 (FARNESYLATED PROTEIN 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0030001The directed movement of metal ions, any metal ion with an electric charge, into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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