CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22890

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.42 53.9 At1g22890 838896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.25 22.6 At1g13700 837931 glucosamine/galactosamine-6-phosphate isomerase family protein F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:cellular_component unknown;BOFMP S.X. H.G.
0.23 19.3 At4g36670 829820 mannitol transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMOPAV S.X. H.G.
0.22 17.5 At2g28630 817412 KCS12 (3-KETOACYL-COA SYNTHASE 12) Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.21 15.8 At3g06070 819780 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.18 11.4 At5g22270 832287 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.17 10.2 At2g25200 817058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.15 7.8 At3g16570 820907 RALFL23 (ralf-like 23) Encodes RALF23, a member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. RALF23 is significantly downregulated by brassinolide treatment of seedlings. Overexpression of AtRALF23 impairs brassinolide-induced hypocotyls elongation, and mature overexpressing plants are shorter and bushier. RALF23 overexpression produces slower growing seedlings with roots that have reduced capacity to acidify the rhizosphere. S.X. H.G.
0.14 6.8 At2g39400 818525 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA S.X. H.G.
0.13 5.8 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.9 99.9 E-ATMX-33-raw-cel-1562596197
71.1 99.9 GSM173447 oxt6 mutant, biological rep3 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
66.4 99.8 GSM173446 oxt6 mutant, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
49.0 99.8 GSM173443 wild-type Arabidopsis, biological rep2 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
46.7 99.8 GSM173445 oxt6 mutant, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
45.8 99.8 GSM173442 wild-type Arabidopsis, biological rep1 GSE7211 A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
37.3 99.7 E-ATMX-33-raw-cel-1562596241
35.6 99.7 GSM268245 dor-drought-1, biological rep 1 GSE10643 Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
34.5 99.7 E-ATMX-33-raw-cel-1562596103
29.0 99.7 E-ATMX-33-raw-cel-1562596057
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.23 3e-11 67 At1g22885 838895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.22 1e-7 56 At5g44568 5008297 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.12 2e-3 42 At1g65484 6240315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system C.G. S.X.
0.05 7e-3 40 At3g52510 824416 - F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.03 3e-2 38 At5g19960 832118 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBAV C.G. S.X.
0.20 3e-2 38 At5g44570 834484 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 3e-2 38 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
0.02 3e-2 38 At3g19100 821445 calcium-dependent protein kinase, putative / CDPK, putative F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MOPFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 4e-2 38 Glycine max PsAffx.C144000018_at PsAffx.C144000018 - - 4e+0 At4g36925 unknown protein C.G. S.X.
0.07 5e-2 36 Hordeum vulgare Contig24279_at Contig24279 - - 1e-1 At1g22890 unknown protein C.G. S.X.
0.04 3e-3 42 Oryza sativa Os.22698.1.S1_at - - - 0 C.G. S.X.
0.07 9e-3 40 Populus trichocarpa PtpAffx.66652.1.S1_at BU823425 hypothetical protein - 7e-1 At2g02740 WHY3 (WHIRLY 3) C.G. S.X.
0.05 3e-2 38 Triticum aestivum Ta.25697.1.A1_at CD373928 - - 3e-1 At2g41600 - C.G. S.X.
0.07 8e-3 38 Vitis vinifera 1611444_at CF211599 - - 2e-1 At2g40310 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein C.G. S.X.
0.05 2e-1 34 Zea mays ZmAffx.1037.1.A1_at AI881746 - - 8e-1 At1g46768 RAP2.1 (related to AP2 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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