CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22600

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF S.X. H.G.
0.95 97.0 At5g44310 834454 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV S.X. H.G.
0.91 95.6 At3g53040 824470 late embryogenesis abundant protein, putative / LEA protein, putative F:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAV S.X. H.G.
0.74 86.1 At2g40170 818608 GEA6 (LATE EMBRYOGENESIS ABUNDANT 6) Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation. S.X. H.G.
0.74 86.1 At5g07330 830624 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P S.X. H.G.
0.71 84.2 At2g36640 818236 ATECP63 (EMBRYONIC CELL PROTEIN 63) Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2. S.X. H.G.
0.63 78.1 At5g51760 835250 AHG1 (ABA-hypersensitive germination 1) Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination. S.X. H.G.
0.51 66.3 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. S.X. H.G.
0.46 59.8 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV S.X. H.G.
0.40 50.8 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
378.1 100.0 GSM133304 RIKEN-NAKABAYASHI1B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
302.5 100.0 GSM133303 RIKEN-NAKABAYASHI1A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
192.4 100.0 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
173.9 100.0 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
171.8 100.0 E-MEXP-849-raw-cel-1181980982
159.3 99.9 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
153.8 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
124.3 99.9 GSM133309 RIKEN-NAKABAYASHI4B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
123.8 99.9 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
122.0 99.9 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 2e-13 77 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV C.G. S.X.
0.01 6e-1 36 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. C.G. S.X.
0.02 6e-1 36 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO C.G. S.X.
0.03 2e+0 34 At5g11930 831066 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO C.G. S.X.
0.01 2e+0 34 At4g23310 828430 receptor-like protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e+0 34 At4g17080 827416 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.01 2e+0 34 At3g23410 821922 alcohol oxidase-related Encodes a fatty alcohol oxidase. C.G. S.X.
0.01 2e+0 34 At2g35170 818084 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPF C.G. S.X.
0.02 2e+0 34 At1g01225 839358 NC domain-containing protein-related F:unknown;P:unknown;C:cellular_component unknown;PBMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-1 38 Glycine max Gma.133.1.S1_at AF117723.1 seed maturation protein PM27 - 2e-1 At1g22600 - C.G. S.X.
0.05 5e-3 42 Hordeum vulgare Contig12232_at Contig12232 - - 8e-3 At1g22600 - C.G. S.X.
0.02 5e-3 44 Oryza sativa Os12g0612600 9640.m04104 - - 3e-3 At1g22600 - C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.200415.1.S1_at pmrna839 hypothetical protein - 1e+0 At5g40630 ubiquitin family protein C.G. S.X.
0.02 1e-5 52 Triticum aestivum TaAffx.116604.1.S1_at CD490483 - - 1e+0 At1g72100 late embryogenesis abundant domain-containing protein / LEA domain-containing protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1610364_at BM437363 hypothetical protein LOC100256105 - 4e-10 At5g15080 protein kinase, putative C.G. S.X.
0.02 2e+1 30 Zea mays ZmAffx.979.1.A1_at AI833962 UBP26 - 8e-1 At3g15140 exonuclease family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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