Gene omics information

Query gene ID At1g22600
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g22600838866-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFS.X.H.G.
0.9597.0At5g44310834454late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAVS.X.H.G.
0.9195.6At3g53040824470late embryogenesis abundant protein, putative / LEA protein, putativeF:unknown;P:embryonic development ending in seed dormancy;C:unknown;MBOFPAVS.X.H.G.
0.7486.1At2g40170818608GEA6 (LATE EMBRYOGENESIS ABUNDANT 6)Encodes a group 1 LEA gene that is activated by direct binding of ABI5 to its promoter and is involved in response to ABA. Is required for normal seed development. Involved in regulating the timing of dessication tolerance and rate of water loss during seed maturation.S.X.H.G.
0.7486.1At5g07330830624unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PS.X.H.G.
0.7184.2At2g36640818236ATECP63 (EMBRYONIC CELL PROTEIN 63)Encodes putative phosphotyrosine protein belonging to late embryogenesis abundant (LEA) protein in group 3 that might be involved in maturation and desiccation tolerance of seeds. RFLP and CAPS mapping place it on chromosome 4 but the nucleotide sequence maps it to chromosome 2.S.X.H.G.
0.6378.1At5g51760835250AHG1 (ABA-hypersensitive germination 1)Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.S.X.H.G.
0.5166.3At5g62490836369ATHVA22BPart of the AtHVA22 family. Protein expression is ABA- and stress-inducible.S.X.H.G.
0.4659.8At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVS.X.H.G.
0.4050.8At2g28420817390lactoylglutathione lyase family protein / glyoxalase I family proteinF:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
378.1100.0GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
302.5100.0GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
192.4100.0GSM134302Penfield_1-4_endosperm-ABA_Rep1_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
173.9100.0GSM134303Penfield_1-5_endosperm-ABA_Rep2_ATH1GSE5751The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
171.8100.0E-MEXP-849-raw-cel-1181980982
159.399.9GSM131706ATGE_84_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
153.899.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
124.399.9GSM133309RIKEN-NAKABAYASHI4BGSE5700AtGenExpress: Effect of ABA during seed imbibition
123.899.9GSM131708ATGE_84_DGSE5634AtGenExpress: Developmental series (siliques and seeds)
122.099.9GSM131707ATGE_84_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.222e-1377At1g72100843541late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAVC.G.S.X.
0.016e-136At5g08550830755ILP1 (increased level of polyploidy1-1D)Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression.C.G.S.X.
0.026e-136At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOC.G.S.X.
0.032e+034At5g11930831066glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBOC.G.S.X.
0.012e+034At4g23310828430receptor-like protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:defense response;C:endomembrane system;MPOBFVAC.G.S.X.
0.012e+034At4g17080827416-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFC.G.S.X.
0.012e+034At3g23410821922alcohol oxidase-relatedEncodes a fatty alcohol oxidase.C.G.S.X.
0.012e+034At2g35170818084MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFC.G.S.X.
0.022e+034At1g01225839358NC domain-containing protein-relatedF:unknown;P:unknown;C:cellular_component unknown;PBMOC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-138Glycine maxGma.133.1.S1_atAF117723.1seed maturation protein PM27-2e-1At1g22600-C.G.S.X.
0.055e-342Hordeum vulgareContig12232_atContig12232--8e-3At1g22600-C.G.S.X.
0.025e-344Oryza sativaOs12g06126009640.m04104--3e-3At1g22600-C.G.S.X.
0.023e+034Populus trichocarpaPtpAffx.200415.1.S1_atpmrna839hypothetical protein-1e+0At5g40630ubiquitin family proteinC.G.S.X.
0.021e-552Triticum aestivumTaAffx.116604.1.S1_atCD490483--1e+0At1g72100late embryogenesis abundant domain-containing protein / LEA domain-containing proteinC.G.S.X.
0.023e+032Vitis vinifera1610364_atBM437363hypothetical protein LOC100256105-4e-10At5g15080protein kinase, putativeC.G.S.X.
0.022e+130Zea maysZmAffx.979.1.A1_atAI833962UBP26-8e-1At3g15140exonuclease family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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