Gene omics information

Query gene ID At1g22500
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At1g22500838856zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBS.X.H.G.
0.2115.8At2g44380819045DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;PMOS.X.H.G.
0.146.8At5g64100836531peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOS.X.H.G.
0.114.1At4g32650829400ATKC1 (ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1)A member of the Shaker family of voltage-gated potassium channel subunits. Does not form functional potassium channel on its own. Involved in down-regulating AKT1 and KAT1 channel activity by forming heteromers with AKT1 or KAT1.S.X.H.G.
0.092.8At1g13300837890myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
50.899.8E-MEXP-475-raw-cel-680982467
50.699.8GSM258794pvip1 pvip2 seedling biological replicate 3GSE10248Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
50.599.8GSM258793pvip1 pvip2 seedling biological replicate 2GSE10248Gene expression analysis of Arabidopsis pvip1 pvip2 seedlings
47.899.8GSM157335Coates_1-7_Col-3_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
47.799.8GSM157336Coates_1-8_ara1/2mut_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
46.099.8GSM157332Coates_1-4_ara1/2mut_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
42.599.8GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
41.799.8GSM157330Coates_1-2_ara1OX_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
40.299.8E-MEXP-475-raw-cel-680982395
39.199.8GSM218592Whole roots 3.5hr KCl control treated then frozen, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.322e-31137At1g72200843552zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.104e-1479At2g35000818064zinc finger (C3HC4-type RING finger) family proteinE3 ligase-like protein induced by chitin oligomers.C.G.S.X.
0.057e-1375At3g05200819684ATL6Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).C.G.S.X.
0.081e-552At1g35330840422zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.072e-448At5g27420832801zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to chitin, response to abscisic acid stimulus;C:endomembrane system;PMOFVC.G.S.X.
0.059e-342At2g34990818063zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.031e-138At4g09110826489zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVBC.G.S.X.
0.021e-138At3g50630824226KRP2 (KIP-RELATED PROTEIN 2)Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.073e-654Glycine maxGmaAffx.28563.1.S1_atBQ094213--9e-7At1g22500zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.023e-136Hordeum vulgareContig24569_atContig24569--8e-2At2g42230tubulin-specific chaperone C-relatedC.G.S.X.
0.034e+034Oryza sativaOs12g04213009640.m02213--6e-1At1g12830unknown proteinC.G.S.X.
0.072e-1067Populus trichocarpaPtpAffx.118885.1.S1_s_atDN502040hypothetical protein-4e-13At1g72200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.032e+034Triticum aestivumTa.5111.1.S1_atBJ271819--1e+0At5g60220TET4 (TETRASPANIN4)C.G.S.X.
0.023e+032Vitis vinifera1621997_s_atCF512249hypothetical protein LOC100259237-2e-1At1g14200zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.024e+032Zea maysZm.16475.4.S1_atBG841751--1e-3At1g06960small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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