CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22330

Gene name RNA binding / nucleic acid binding / nucleotide binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At1g22330 838839 RNA binding / nucleic acid binding / nucleotide binding F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA S.X. H.G.
0.40 50.8 At3g58120 824981 BZIP61 Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. S.X. H.G.
0.38 46.7 At5g03120 831807 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.38 46.7 At1g04240 839570 SHY2 (SHORT HYPOCOTYL 2) SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. S.X. H.G.
0.23 19.3 At2g30930 817644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane, membrane;BOFMPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.9 99.8 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
36.0 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
33.4 99.7 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.6 99.7 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
32.5 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.5 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.5 99.7 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
27.4 99.7 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.7 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
25.5 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 8e-123 440 At1g78260 844161 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBA C.G. S.X.
0.02 5e-7 56 At5g11710 831043 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related EPSIN1 plays an important role in the vacuolar trafficking of soluble proteins at the trans-Golgi network via its interaction with gamma-ADR, VTI11, VSR1, and clathrin. Associated with actin filaments and with the Golgi complex. Expressed in most tissues. C.G. S.X.
0.02 2e-6 54 At5g62090 836329 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.03 7e-6 52 At5g17510 831617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVA C.G. S.X.
0.02 7e-6 52 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. C.G. S.X.
0.02 7e-6 52 At1g25540 839141 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 3e-12 73 Glycine max Gma.6644.1.S1_at AW203260 - - 6e-24 At1g78260 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.04 2e-4 46 Hordeum vulgare Contig26118_s_at Contig26118 - - 1e+0 At5g36280 - C.G. S.X.
0.04 2e-4 48 Oryza sativa OsAffx.28224.1.S1_at - - - 0 C.G. S.X.
0.17 4e-8 59 Populus trichocarpa PtpAffx.201931.1.S1_at pmrna3849 hypothetical protein - 9e-9 At1g22330 RNA binding / nucleic acid binding / nucleotide binding C.G. S.X.
0.04 5e-7 56 Triticum aestivum TaAffx.79383.1.S1_at CA716967 - - 6e-2 At1g49010 myb family transcription factor C.G. S.X.
0.04 1e-7 56 Vitis vinifera 1610038_at CF516172 hypothetical protein LOC100262968 - 2e-11 At5g21280 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 8e-4 44 Zea mays Zm.13542.1.S1_at AY108280.1 Transcription factor MYB31 - 4e-24 At4g38620 MYB4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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