CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22090

Gene name emb2204 (embryo defective 2204)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P S.X. H.G.
0.80 89.8 At2g20800 816609 NDB4 (NAD(P)H dehydrogenase B4) F:NADH dehydrogenase activity;P:unknown;C:extrinsic to mitochondrial inner membrane, mitochondrion, plastid;BOFPAM S.X. H.G.
0.67 81.6 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB S.X. H.G.
0.67 81.6 At1g71380 843479 ATCEL3 (ARABIDOPSIS THALIANA CELLULASE 3) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.55 70.6 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
200.6 100.0 E-ATMX-13-raw-cel-1556149775
150.0 99.9 E-ATMX-13-raw-cel-1556149727
146.2 99.9 E-ATMX-13-raw-cel-1556149871
142.9 99.9 E-ATMX-13-raw-cel-1556149855
137.5 99.9 E-ATMX-13-raw-cel-1556149887
133.4 99.9 E-ATMX-13-raw-cel-1556149919
129.6 99.9 E-ATMX-13-raw-cel-1556149903
115.8 99.9 E-ATMX-13-raw-cel-1556149791
114.9 99.9 E-MEXP-1797-raw-cel-1669767967
111.7 99.9 E-ATMX-13-raw-cel-1556149839
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 8e-6 52 At1g23950 839006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.08 3e-5 50 At1g02770 839421 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.06 2e-3 44 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.11 8e-3 42 At3g19520 821488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.44540.1.S1_s_at BE583864 - - 6e-1 At5g18661 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig25002_at Contig25002 - - 1e+0 At3g07425 unknown protein C.G. S.X.
0.03 1e+0 36 Oryza sativa OsAffx.9048.1.S1_at - - - 0 C.G. S.X.
0.04 7e-1 36 Populus trichocarpa PtpAffx.117473.1.S1_at DN496167 hypothetical protein - 1e-1 At3g46230 ATHSP17.4 C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.35389.1.S1_at BQ608505 - - 4e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.02 1e-1 36 Vitis vinifera 1612722_at CF372454 hypothetical protein LOC100264158 - 2e+0 At4g18100 60S ribosomal protein L32 (RPL32A) C.G. S.X.
0.02 8e-1 34 Zea mays Zm.9151.1.S1_at BM266916 katanin p60 ATPase-containing subunit - 3e-1 At1g80350 ERH3 (ECTOPIC ROOT HAIR 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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