Gene omics information

Query gene ID At1g22060
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5267.4At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBS.X.H.G.
0.5065.3At2g38440818425SCAR2 (SCAR HOMOLOG 2)Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype.S.X.H.G.
0.4862.5At2g35110818077GRL (GNARLED)Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs.S.X.H.G.
0.4558.3At2g25660817107emb2410 (embryo defective 2410)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BOPS.X.H.G.
0.4457.2At3g55480824714adaptin family proteinF:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOPS.X.H.G.
0.4253.9At5g22760832339PHD finger family proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFOS.X.H.G.
0.4152.4At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAS.X.H.G.
0.4152.4At5g38880833879unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAS.X.H.G.
0.4152.4At2g20190816539CLASP (CLIP-ASSOCIATED PROTEIN)Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.399.7GSM242960Steroid day 3 (day3D2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
24.199.6GSM242957Mock day 3 (day3E1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
21.999.6GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
19.799.6GSM131589ATGE_35_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
17.299.5GSM242959Steroid day 3 (day3D1)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
17.199.5GSM131590ATGE_35_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
15.199.4GSM10446WT 24-Hr Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
14.699.4GSM242954Mock day 1 (day1E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
14.599.4GSM131588ATGE_35_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
14.499.4GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.180648At1g22000838803F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAVC.G.S.X.
0.011e-244At3g12190820396-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.012e-140At5g04780830356-F:unknown;P:biological_process unknown;C:chloroplast;POMFBC.G.S.X.
0.012e-140At1g34760840380GRF11 (GENERAL REGULATORY FACTOR 11)Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light.C.G.S.X.
0.018e-138At5g14290831279-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMC.G.S.X.
0.018e-138At5g52280835304protein transport protein-relatedF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAVC.G.S.X.
0.018e-138At4g00232826492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.018e-138At4g17180827429glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-1277Glycine maxGma.16137.1.S1_atCD398838--2e-13At1g22060-C.G.S.X.
0.019e-240Hordeum vulgareContig12291_atContig12291--5e-2At1g18860WRKY61C.G.S.X.
0.031e-25121Oryza sativaOs10g0363700BI803810-Conserved hypothetical protein4e+0At4g14430IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)C.G.S.X.
0.063e-1379Populus trichocarpaPtpAffx.201902.1.S1_atpmrna3792hypothetical protein-2e-13At1g22060-C.G.S.X.
0.018e-138Triticum aestivumTaAffx.84127.1.S1_atCA644166--3e-1At1g55060UBQ12 (UBIQUITIN 12)C.G.S.X.
0.012e-138Vitis vinifera1622153_atCD010234--1e+0At5g48950thioesterase family proteinC.G.S.X.
0.011e+036Zea maysZm.16356.1.A2_atCF006790--8e-17At4g24920protein transport protein SEC61 gamma subunit, putativeC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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