CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22060

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.99 98.1 At1g22060 838811 - F:unknown;P:unknown;C:vacuole;MOBFPAV S.X. H.G.
0.52 67.4 At5g27970 832867 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MFOPB S.X. H.G.
0.50 65.3 At2g38440 818425 SCAR2 (SCAR HOMOLOG 2) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. S.X. H.G.
0.48 62.5 At2g35110 818077 GRL (GNARLED) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Mutant displays distorted trichomes, a phenotype that can be phenocopied by treatment of WT plants with actin-interacting drugs. S.X. H.G.
0.45 58.3 At2g25660 817107 emb2410 (embryo defective 2410) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BOP S.X. H.G.
0.44 57.2 At3g55480 824714 adaptin family protein F:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOP S.X. H.G.
0.42 53.9 At5g22760 832339 PHD finger family protein F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPFO S.X. H.G.
0.41 52.4 At3g17750 821043 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVA S.X. H.G.
0.41 52.4 At5g38880 833879 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPA S.X. H.G.
0.41 52.4 At2g20190 816539 CLASP (CLIP-ASSOCIATED PROTEIN) Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.3 99.7 GSM242960 Steroid day 3 (day3D2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
24.1 99.6 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
21.9 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.7 99.6 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
17.2 99.5 GSM242959 Steroid day 3 (day3D1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
17.1 99.5 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
15.1 99.4 GSM10446 WT 24-Hr Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
14.6 99.4 GSM242954 Mock day 1 (day1E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
14.5 99.4 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
14.4 99.4 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.18 0 648 At1g22000 838803 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAV C.G. S.X.
0.01 1e-2 44 At3g12190 820396 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 2e-1 40 At5g04780 830356 - F:unknown;P:biological_process unknown;C:chloroplast;POMFB C.G. S.X.
0.01 2e-1 40 At1g34760 840380 GRF11 (GENERAL REGULATORY FACTOR 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. C.G. S.X.
0.01 8e-1 38 At5g14290 831279 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
0.01 8e-1 38 At5g52280 835304 protein transport protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.01 8e-1 38 At4g00232 826492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 8e-1 38 At4g17180 827429 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-12 77 Glycine max Gma.16137.1.S1_at CD398838 - - 2e-13 At1g22060 - C.G. S.X.
0.01 9e-2 40 Hordeum vulgare Contig12291_at Contig12291 - - 5e-2 At1g18860 WRKY61 C.G. S.X.
0.03 1e-25 121 Oryza sativa Os10g0363700 BI803810 - Conserved hypothetical protein 4e+0 At4g14430 IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10) C.G. S.X.
0.06 3e-13 79 Populus trichocarpa PtpAffx.201902.1.S1_at pmrna3792 hypothetical protein - 2e-13 At1g22060 - C.G. S.X.
0.01 8e-1 38 Triticum aestivum TaAffx.84127.1.S1_at CA644166 - - 3e-1 At1g55060 UBQ12 (UBIQUITIN 12) C.G. S.X.
0.01 2e-1 38 Vitis vinifera 1622153_at CD010234 - - 1e+0 At5g48950 thioesterase family protein C.G. S.X.
0.01 1e+0 36 Zea mays Zm.16356.1.A2_at CF006790 - - 8e-17 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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