CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g22040

Gene name kelch repeat-containing F-box family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g22040 838809 kelch repeat-containing F-box family protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:chloroplast;MPBOVFA S.X. H.G.
0.53 68.6 At3g29270 822584 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPO S.X. H.G.
0.50 65.3 At5g63910 836512 FCLY (FARNESYLCYSTEINE LYASE) encodes for a farnesylcysteine lyase (EC 1.8.3.5 - prenylcysteine oxidase) involved in a salvage pathway of farnesyl diphosphate. S.X. H.G.
0.49 63.5 At1g54115 841851 CCX4 (CATION CALCIUM EXCHANGER 4) Involved in cation (Na and K) homeostasis. S.X. H.G.
0.49 63.5 At5g56180 835717 ATARP8 (ACTIN-RELATED PROTEIN 8) encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. S.X. H.G.
0.48 62.5 At4g04860 825823 DER2.2 (DERLIN-2.2) F:unknown;P:proteolysis;C:cellular_component unknown;MOFP S.X. H.G.
0.48 62.5 At3g55530 824718 SDIR1 (SALT- AND DROUGHT-INDUCED RING FINGER1) Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. S.X. H.G.
0.48 62.5 At1g11020 837644 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFV S.X. H.G.
0.46 59.8 At4g33890 829532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO S.X. H.G.
0.45 58.3 At4g19670 827711 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFB S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.0 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.1 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
43.0 99.8 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.9 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.5 99.8 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
39.7 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.5 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.0 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.0 99.7 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
32.7 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 6e-20 99 At3g44670 823593 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response to bacterium, N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMOBFAV C.G. S.X.
0.03 9e-16 85 At3g44630 823589 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:N-terminal protein myristoylation, defense response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.04 3e-15 83 At3g44480 823573 RPP1 (recognition of peronospora parasitica 1) Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew). C.G. S.X.
0.02 3e-3 44 At1g55270 841972 kelch repeat-containing F-box family protein F:molecular_function unknown;P:unknown;C:unknown;MPOBVAF C.G. S.X.
0.01 7e-1 36 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 1e-34 149 Glycine max GmaAffx.91020.1.S1_at CF806745 - - 3e-35 At1g22040 kelch repeat-containing F-box family protein C.G. S.X.
0.04 4e-13 75 Hordeum vulgare Contig10272_at Contig10272 - - 8e-13 At1g22040 kelch repeat-containing F-box family protein C.G. S.X.
0.04 6e-3 44 Oryza sativa Os10g0363600 AK111523.1 - Cyclin-like F-box domain containing protein 4e-3 At1g22040 kelch repeat-containing F-box family protein C.G. S.X.
0.02 3e-1 38 Populus trichocarpa PtpAffx.208495.1.S1_at pmrna16870 hypothetical protein - 1e-5 At1g06330 copper-binding family protein C.G. S.X.
0.04 3e-3 44 Triticum aestivum Ta.8836.2.S1_at BJ246543 - - 1e-3 At1g22040 kelch repeat-containing F-box family protein C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1608984_at CB972653 - - 6e-2 Atmg00280 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.19082.1.S1_at CO523740 kelch motif family protein - 2e+0 At3g45275 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage