CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g21910

Gene name AP2 domain-containing transcription factor family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g21910 838793 AP2 domain-containing transcription factor family protein encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
1.00 100.0 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds S.X. H.G.
1.00 100.0 At1g77640 844099 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
1.00 100.0 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB S.X. H.G.
0.89 94.6 At5g57560 835860 TCH4 (Touch 4) Encodes a cell wall-modifying enzyme, rapidly upregulated in response to environmental stimuli S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.1 99.9 E-MEXP-807-raw-cel-1173273196
121.3 99.9 E-MEXP-807-raw-cel-1173273170
75.0 99.9 E-MEXP-807-raw-cel-1173273223
58.2 99.8 E-ATMX-30-raw-cel-1513696854
51.4 99.8 E-MEXP-807-raw-cel-1173273116
50.0 99.8 E-MEXP-807-raw-cel-1173273060
47.6 99.8 E-MEXP-98-raw-cel-320188804
40.8 99.8 GSM128776 Eulgem_1-3_Col-0-MKK2-w.t.4_Rep1_AG GSE5532 Responses to overexpression of wild type and constitutively active Arabidopsis MAP Kinase Kinase 2
40.0 99.8 E-MEXP-98-raw-cel-320188859
33.3 99.7 E-MEXP-1725-raw-cel-1669614592
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-47 190 At1g77640 844099 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.20 5e-31 135 At1g44830 841047 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.02 2e-5 50 At3g56660 824833 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPFO C.G. S.X.
0.06 2e-5 50 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.05 2e-5 50 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.04 9e-5 48 At1g53910 841829 RAP2.12 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. C.G. S.X.
0.03 4e-4 46 At3g58120 824981 BZIP61 Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-1 36 Glycine max GmaAffx.78708.1.S1_at BQ742425 - - 2e-1 At1g15100 RHA2A C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig23232_at Contig23232 - - 2e-1 At1g21910 AP2 domain-containing transcription factor family protein C.G. S.X.
0.04 4e-2 40 Oryza sativa Os12g0572150 9640.m03733 - - 2e+0 At2g25500 - C.G. S.X.
0.18 2e-34 147 Populus trichocarpa PtpAffx.8810.1.S1_at CK096534 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 2e-34 At1g21910 AP2 domain-containing transcription factor family protein C.G. S.X.
0.07 1e+0 34 Triticum aestivum TaAffx.26634.1.S1_at CA686921 - - 6e-1 At3g55646 unknown protein C.G. S.X.
0.05 3e-2 38 Vitis vinifera 1614975_at CD799759 hypothetical protein LOC100264828 - 2e-1 At5g14440 - C.G. S.X.
0.05 1e-1 36 Zea mays ZmAffx.1083.1.A1_at AI974922 - - 1e+0 At1g59830 PP2A-1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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