CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g21590

Gene name protein kinase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At1g21590 838760 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.29 30.3 At1g13090 837866 CYP71B28 putative cytochrome P450 S.X. H.G.
0.25 22.6 At4g04770 825814 ATABC1 (ATP BINDING CASSETTE PROTEIN 1) Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast. S.X. H.G.
0.09 2.8 At5g50920 835165 CLPC1 Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. S.X. H.G.
0.06 1.4 At3g56050 824771 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA S.X. H.G.
0.01 0.2 At1g32160 840108 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.5 99.4 GSM197139 S58-2_1 with array type ATH1 from Affymetrix GSE7961 affy_aba_ath1-Characterization of aba3-1 suppressor mutants
13.2 99.4 E-MEXP-1454-raw-cel-1585857999
13.1 99.4 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
12.5 99.3 E-ATMX-32-raw-cel-1562974504
12.2 99.3 GSM269818 C2 leaf-well watered-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.8 99.3 GSM133114 JD AT+EO TIME EXP3 UNINF 4D GSE5686 AtGenExpress: Pathogen Series: Response to Erysiphe orontii infection
11.4 99.3 E-ATMX-32-raw-cel-1562974621
11.4 99.3 GSM128648 Underwood_1-1_Cor-10e6-24h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.4 99.3 GSM269824 T8 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
11.1 99.2 E-ATMX-32-raw-cel-1562974462
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.46 2e-153 543 At1g77280 844064 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.03 7e-5 50 At5g63940 836515 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.02 2e-2 42 At2g16750 816176 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 7e-2 40 At5g51590 835233 DNA-binding protein-related F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVB C.G. S.X.
0.01 7e-2 40 At3g47130 823866 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 7e-2 40 At2g33580 817923 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:plasma membrane;MPOBFVA C.G. S.X.
0.01 3e-1 38 At4g34440 829595 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPBFVA C.G. S.X.
0.01 3e-1 38 At2g47450 819358 CAO (CHAOS) A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. It is downregulated in response to high light. It recognizes the DPLG motif in Lhcb1. C.G. S.X.
0.01 3e-1 38 At1g24120 839024 ARL1 (ARG1-LIKE 1) encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-3 44 Glycine max GmaAffx.86222.1.S1_at BE023382 - - 4e-11 At5g63940 protein kinase family protein C.G. S.X.
0.02 4e-2 40 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 4e-2 42 Oryza sativa Os.56894.1.S1_at - - - 0 C.G. S.X.
0.15 9e-33 143 Populus trichocarpa PtpAffx.1232.1.A1_at CV238234 hypothetical protein - 3e-37 At1g77280 protein kinase family protein C.G. S.X.
0.03 8e-5 50 Triticum aestivum TaAffx.66078.1.S1_at BJ208855 - - 9e-1 At5g35960 protein kinase, putative C.G. S.X.
0.02 9e-2 38 Vitis vinifera 1620386_at CB970014 hypothetical protein LOC100250252 - 3e-11 At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.6048.2.A1_at AI745933 - - 6e-17 At2g24360 serine/threonine/tyrosine kinase, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
L GO:0006950 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage