Gene omics information

Query gene ID At1g21200
Gene name transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At1g21200838715transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;POMBVAFS.X.H.G.
0.4659.8At3g12250820405TGA6 (TGACG MOTIF-BINDING FACTOR 6)basic leucine zipper transcription factor involved in the activation of SA-responsive genes.S.X.H.G.
0.3745.0At2g17570816264undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family proteinF:transferase activity, transferring alkyl or aryl (other than methyl) groups;P:unknown;C:unknown;OBMAFPS.X.H.G.
0.3439.8At5g40470834045-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFBS.X.H.G.
0.3338.1At3g19770821514VPS9AGuanine nucleotide exchange factor VPS9a. Can ctivate all Rab5 members to GTP-bound forms in vitro. Required for embryogenesis. Regulates the localization of ARA7 and ARA6. Involved in postembryonic root development.S.X.H.G.
0.3133.8At2g17110816215unknown proteinF:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFBOS.X.H.G.
0.3133.8At5g10600830925CYP81K2member of CYP81KS.X.H.G.
0.3133.8At4g26980828806unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.3133.8At4g02640828219BZO2H1Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.S.X.H.G.
0.3032.1At5g55860835681unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
332.6100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
134.099.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
99.299.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
73.599.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
67.899.9GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
66.099.8GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
64.999.8GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
64.199.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
60.499.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
54.699.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.372e-93343At1g76870844022-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBC.G.S.X.
0.095e-859At3g10040820165transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAC.G.S.X.
0.021e-242At1g15960838166NRAMP6member of Nramp2 familyC.G.S.X.
0.024e-240At3g12920820477protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOVC.G.S.X.
0.024e-240At3g19810821518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPC.G.S.X.
0.012e-138At5g18700831988EMB3013 (embryo defective 3013)F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.012e-138At2g45460819154forkhead-associated domain-containing protein / FHA domain-containing proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:chloroplast;MOBFPAVC.G.S.X.
0.022e-138At1g54080841846oligouridylate-binding protein, putativeF:mRNA 3'-UTR binding;P:unknown;C:plasma membrane;MPFOBC.G.S.X.
0.012e-138At1g55380841985DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.266e-39163Glycine maxGma.8388.1.S1_atBE659426--5e-39At1g21200transcription factorC.G.S.X.
0.021e+034Hordeum vulgareContig18752_atContig18752--4e-6At4g16510YbaK/prolyl-tRNA synthetase-relatedC.G.S.X.
0.049e-859Oryza sativaOs11g0163500AK101154.1-Homeodomain-like containing protein9e-8At1g21200transcription factorC.G.S.X.
0.438e-60232Populus trichocarpaPtpAffx.205607.1.S1_atpmrna11071hypothetical protein-4e-60At1g21200transcription factorC.G.S.X.
0.033e+034Triticum aestivumTaAffx.58270.1.S1_atCA621007--4e+0At5g24570unknown proteinC.G.S.X.
0.038e-134Vitis vinifera1617468_atCA814578hypothetical protein LOC100252029-9e-2At1g17860trypsin and protease inhibitor family protein / Kunitz family proteinC.G.S.X.
0.025e+032Zea maysZmAffx.443.1.A1_atAI677012hypothetical protein LOC100192771-2e-1At3g19000oxidoreductase, 2OG-Fe(II) oxygenase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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