CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At1g20823

Gene name zinc finger (C3HC4-type RING finger) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.62 77.3 At1g20823 838674 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:response to chitin;C:unknown;PMOFV S.X. H.G.
0.79 89.1 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF S.X. H.G.
0.68 82.2 At4g34410 829591 RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. S.X. H.G.
0.67 81.6 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO S.X. H.G.
0.64 78.9 At4g27654 828878 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.63 78.1 At1g74930 843832 ORA47 encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.58 73.8 At2g05050 3767735 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown S.X. H.G.
0.58 73.8 At5g59820 836103 RHL41 (RESPONSIVE TO HIGH LIGHT 41) Encodes a zinc finger protein involved in high light and cold acclimation. Overexpression of this putative transcription factor increases the expression level of 9 cold-responsive genes and represses the expression level of 15 cold-responsive genes, including CBF genes. Also, lines overexpressing this gene exhibits a small but reproducible increase in freeze tolerance. Because of the repression of the CBF genes by the overexpression of this gene, the authors speculate that this gene may be involved in negative regulatory circuit of the CBF pathway. S.X. H.G.
0.57 73.8 At3g28340 822462 GATL10 (Galacturonosyltransferase-like 10) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.57 73.8 At4g11280 826730 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.9 100.0 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
148.7 99.9 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
121.1 99.9 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
93.7 99.9 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
92.3 99.9 GSM184503 Pericycle root cells 2hr KCl control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.2 99.9 GSM218587 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.3 99.9 GSM184498 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
86.0 99.9 GSM184502 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.0 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
80.9 99.9 GSM184501 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 1e-25 117 At1g76410 843974 ATL8 F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.06 2e-5 50 At2g27940 817338 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.05 3e-4 46 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV C.G. S.X.
0.02 5e-3 42 At1g10180 837556 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
0.10 3e-1 36 At4g35480 829700 RHA3B Encodes a putative RING-H2 finger protein RHA3b. C.G. S.X.
0.02 1e+0 34 At4g11080 826709 high mobility group (HMG1/2) family protein F:transcription factor activity;P:unknown;C:nucleus, chloroplast;MOBFPAV C.G. S.X.
0.01 1e+0 34 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.01 1e+0 34 At4g18350 827562 NCED2 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2) Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition. C.G. S.X.
0.02 1e+0 34 At3g17520 821017 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 7e-12 71 Glycine max Gma.16021.1.S1_at BQ296209 - - 9e-12 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 4e-2 38 Hordeum vulgare Contig15777_at Contig15777 - - 5e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 4e-2 40 Oryza sativa OsAffx.24924.1.S1_at - - - 0 C.G. S.X.
0.14 5e-22 105 Populus trichocarpa PtpAffx.146834.1.A1_at CV260554 hypothetical protein - 1e-13 At1g76410 ATL8 C.G. S.X.
0.06 8e-2 38 Triticum aestivum TaAffx.3070.1.S1_at CK161607 - - 1e-1 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.24 1e-19 95 Vitis vinifera 1619976_at CF604790 hypothetical protein LOC100266753 - 4e-19 At1g20823 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 3e-2 38 Zea mays Zm.11029.1.A1_at CK347194 hypothetical protein LOC100276969 - 1e-1 At3g53235 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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